+ Site Statistics
+ Search Articles
+ PDF Full Text Service
How our service works
Request PDF Full Text
+ Follow Us
Follow on Facebook
Follow on Twitter
Follow on LinkedIn
+ Subscribe to Site Feeds
Most Shared
PDF Full Text
+ Translate
+ Recently Requested

Visualization of protein fold space via nonmetric multidimensional scaling



Visualization of protein fold space via nonmetric multidimensional scaling



Protein and Peptide Letters 12(5): 473-475



In this paper, a 3D map of protein fold space was produced using Dali structure alignment and nonmetric multidimensional scaling. The fold space comprises four radial clusters, which correspond to the four classes of SCOP.

Please choose payment method:






(PDF emailed within 1 workday: $29.90)

Accession: 012743365

Download citation: RISBibTeXText

PMID: 16029160


Related references

Visualization of Protein Fold Space via Nonmetric Multidimensional Scaling. Protein and Peptide Letters 12(5): 473-475, 2005

Nonlinear multidimensional scaling and visualization of earthquake clusters over space, time and feature space. Nonlinear Processes in Geophysics 12(1): 117-128, 2005

Multidimensional scaling for evolutionary algorithms--visualization of the path through search space and solution space using Sammon mapping. Artificial Life 12(2): 203-209, 2006

Multidimensional Unfolding by Nonmetric Multidimensional Scaling of Spearman Distances in the Extended Permutation Polytope. Multivariate Behavioral Research 42(1): 103-132, 2007

Nonmetric individual differences multidimensional scaling: An alternating least squares method with optimal scaling features. Psychometrika 42(1): 7-67, 1977

Pairwise nonmetric multidimensional scaling. Psychometrika 38(1): 11-18, 1973

Completely nonmetric multidimensional scaling. Journal of Mathematical Psychology 18(1): 39-51, 1978

Nonmetric multidimensional scaling: A numerical method. Psychometrika 29(2): 115-129, 1964

A Refinement of Chronological Seriation Using Nonmetric Multidimensional Scaling. American Antiquity 41(3): 290-302, 1976

A new nonmetric multidimensional scaling method for sorting data. Japanese Psychological Research 35(3): 129-139, 1993

Multidimensional scaling by optimizing goodness of fit to a nonmetric hypothesis. Psychometrika 29(1): 1-27, 1964

A New Formulation of the Nonmetric Strain Problem in Multidimensional Scaling. Journal of Classification 15(1): 15-35, 1998

Nonmetric multidimensional scaling of a peatland vegetation data set. Suo 35(3): 57-61, 1984

Nonmetric Interactive Multidimensional Scaling with Multiple Subjects. Applied Psychological Measurement 5(3): 349-354, 1981

Evaluating Goodness of Fit in Nonmetric Multidimensional Scaling by ALSCAL. Applied Psychological Measurement 5(3): 377-382, 1981