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Section 33

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References:

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Zhao, L.; Olsen, K.W. 1997: Molecular dynamics simulations of crosslinked and normal hemoglobins. Biophysical Journal 72(2 Part 2): A103
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Tychko, M.; Woolf, T.B. 1997: Molecular dynamics simulations of intestinal fatty acid binding protein. Biophysical Journal 72(2 Part 2): A309
Alvarez, O.; Appleby, G.; Eisenman, G. 1993: Molecular dynamics simulations of ion permeation for Guy-Durrell atomic scale structures of V-gated potassium-channels. Biophysical Journal 64(2 Part 2): A228
Bush, C.A.; Mukhopadhyay, C. 1992: Molecular dynamics simulations of lewis blood groups and related oligosaccharides. Abstracts of Papers American Chemical Society 203(1-3): CELL11
Schaad, O.; Zhou, H.X.; Henry, E.R.; Szabo, A.; Eaton, W.A. 1993: Molecular dynamics simulations of ligand dissociation and rebinding in myoglobin. Biophysical Journal 64(2 Part 2): A43
Merz, K.M. 1997: Molecular dynamics simulations of lipid bilayers. Current Opinion in Structural Biology 7(4): 511-517
Woolf, T.B.; Roux, B. 1994: Molecular dynamics simulations of lipidprotein interactions Gramicidin A in a DMPC bilayer. Biophysical Journal 66(2 Part 2): A348
Sansom, M.S.; Tieleman, D.P.; Forrest, L.R.; Berendsen, H.J. 1998: Molecular dynamics simulations of membranes with embedded proteins and peptides: porin, alamethicin and influenza virus M2. Biochemical Society Transactions 26(3): 438-443
Bolliger, C.; Kagi, J.H.R.; Braun, W. 1990: Molecular dynamics simulations of metallothionein mt. Experientia 46(ABSTR): A37
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Kyrychenko, A.; Dyubko, T.S. 2008: Molecular dynamics simulations of microstructure and mixing dynamics of cryoprotective solvents in water and in the presence of a lipid membrane. Biophysical Chemistry 136(1): 23-31
Wrabl, J.; Shortle, D.; Woolf, T.B. 1998: Molecular dynamics simulations of native and denatured staphylococcal nuclease. Biophysical Journal 74(2 Part 2): A171
Barvík, I.; Stĕpánek, J.; Bok, J. 1998: Molecular dynamics simulations of nucleic acids: A). Molecular dynamics simulations of the oligonucleotide with the modified phosphate/phosphonate internucleotide linkage. General Physiology and Biophysics 17(Suppl 1): 21-23
Singh, S.B.; Hingerty, B.E.; Geacintov, N.E.; Greenberg, J.; Broye, S. 1990: Molecular dynamics simulations of oligomer guanine n 2 dextro and levo anti benzo a pyrene diol epoxide adducts with solvent and salt. Biophysical Journal 57(2 Part 2): 456A
Qasba, P.K.; Balaji, P.V.; Vallurupalli; Rao, S.R. 1995: Molecular dynamics simulations of oligosaccharides and their conformation in lectin-carbohydrate complexes. Abstracts of Papers American Chemical Society 209(1-2): CARB 101
Meinke, G. 1990: Molecular dynamics simulations of pea lectin. Biophysical Journal 57(2 Part 2): 81A
Pascutti, P.G.; Cassiano, M.M.; Ito, A.S.; Bisch, P.M. 1997: Molecular dynamics simulations of peptide-membrane interactions. Biophysical Journal 72(2 Part 2): A196
Sreerama, N.; Woody, R.W. 1992: Molecular dynamics simulations of polypeptide conformations in water a comparison of alpha beta and p i i conformations. Biophysical Journal 61(2 Part 2): A462
Kerr, I.D.; Sansom, M.S.P. 1995: Molecular dynamics simulations of potassium channel transmembrane helices. Journal of Physiology (Cambridge) 487P: 194P-195P
Daggett, V.; Levitt, M. 1993: Molecular dynamics simulations of protein unfolding. Journal of Cellular Biochemistry Suppl 1993(17 Part C): 223
Woolf, T.B.; Roux, B. 1993: Molecular dynamics simulations of proteins in lipid membranes The first steps. Biophysical Journal 64(2 Part 2): A354
Cordomí, A.; Ramon, E.; Garriga, P.; Perez, J.J. 2008: Molecular dynamics simulations of rhodopsin point mutants at the cytoplasmic side of helices 3 and 6. Journal of Biomolecular Structure and Dynamics 25(6): 573-587
Ichiye, T.; Yelle, R.B.; Beck, B.W. 1993: Molecular dynamics simulations of rubredoxin and redox site analogs in aqueous solution A comparison of the redox site environment. Biophysical Journal 64(2 Part 2): A12
Osman, R.; Smoylar, A. 1994: Molecular dynamics simulations of salmon and human calcitonins in aqueous solution. Biophysical Journal 66(2 Part 2): A15
Elber, R.; Eisenberg, B. 1998: Molecular dynamics simulations of solvated ions between A membrane and metal electrodes at various electric potentials. Biophysical Journal 74(2 Part 2): A342
Barvik, I., J.; Ghomi, M. 1998: Molecular dynamics simulations of the UACG tetraloop in the very short hairpin. General Physiology and Biophysics 17(Suppl 1): 23-24
Díaz, N.; Suárez, D. 2008: Molecular dynamics simulations of the active matrix metalloproteinase-2: positioning of the N-terminal fragment and binding of a small peptide substrate. Proteins 72(1): 50-61
Roux, B.; Karplus, M. 1994: Molecular dynamics simulations of the gramicidin channel. Annual Review of Biophysics and Biomolecular Structure 23: 731-761
Woolf, T.B. 1997: Molecular dynamics simulations of the individual A, B, and the AB pair of alpha-helices from bacteriorhodopsin in explicit bilayer and micelle environments. Biophysical Journal 72(2 Part 2): A120
Kerisit,S.; Liu,C.X.; Ilton,E.S. 2008: Molecular dynamics simulations of the orthoclase - and -water interfaces. Geochimica Et Cosmochimica Acta: 6, 1481-1497
Kubiak, K.; Nowak, W. 2008: Molecular dynamics simulations of the photoactive protein nitrile hydratase. Biophysical Journal 94(10): 3824-3838
Stote, R.H.; Marti Renom, M.A.; Querol, E.; Aviles, F.X.; Karplus, M. 1998: Molecular dynamics simulations of the unfolding and refolding of potato carboxypeptidase inhibitor. Abstracts of Papers American Chemical Society 216(1-3): BTEC 99
Tychko, M.; Woolf, T.B. 1996: Molecular dynamics simulations of two fatty acid binding proteins. Biophysical Journal 70(2 Part 2): A229
Mcdonald, S.M.; Tasaki, K.; Brady, J.W.; Clancy, P. 1992: Molecular dynamics simulations of winter flounder antifreeze polypeptide Stability features and mechanisms of action. Cryobiology 29(6): 717
Miller, J.L.; Kollman, P.A. 1995: Molecular dynamics simulations on an RNA tetraloop Demonstration of the utility of the Particle-Mesh-Ewald method for simulations on non-crystalline systems. Journal of Biomolecular Structure and Dynamics 12(6): A163
Sudhakar, P.V.; Singh, C.; Jakobsson, E.; Subramaniam, S. 1995: Molecular dynamics simulations on cation channel models. Biophysical Journal 68(2 Part 2): A371
Sankararamakrishnan, R.; Sansom, M.S. 1996: Molecular dynamics simulations on solvated M2 helix bundles of nicotinic receptors. Biochemical Society Transactions 24(1): 138s
Weintraub, H.J.R.; Demeter, D.A.; Cardin, A.D.; Jackson, R.L. 1990: Molecular dynamics simulations on the binding of heparin to apolipoprotein e peptides. Brasseur, R (Ed ) Molecular Description Of Biological Membranes By Computer Aided Conformational Analysis, Vol Ii Xi+207p Crc Press, Inc : Boca Raton, Florida, Usa Illus 161-172
Foley, C.K.; Pedersen, L.G.; Charifson, P.S.; Darden, T.A.; Wittinghofer, A.; Pai, E.F.; Anderson, M.W. 1991: Molecular dynamics simulations on the ha ras oncogene product p21. Journal of Cellular Biochemistry Suppl (15 Part G): 182
Lind, K.E.; Mohan, V.; Griffey, R.H.; Ferguson, D.M. 1998: Molecular dynamics simulations reveal structural characteristics of 2-O- ethyl-modified nucleic acids. Biophysical Journal 74(2 Part 2): A288
Haydock, K.; Weinstein, H. 1995: Molecular dynamics simulations to model the properties of constitutively active GPCR mutants. Biophysical Journal 68(2 Part 2): A255
Sreerama, N.; Woody, R.W. 1992: Molecular dynamics stimulations of polypeptide conformations in water a comparison of alpha beta and p i i conformations. FASEB Journal 6(1): A462
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Zhou, F.; Schulten, K. 1994: Molecular dynamics studies of A DLPE membrane bilayer and phospholipase A-2-DLPE membrane complex. Biophysical Journal 66(2 Part 2): A399
Beveridge, D.L.; Ravishanker, G. 1994: Molecular dynamics studies of DNA. Current Opinion in Structural Biology 4(2): 246-255
Sankararamakrishnan, R.; Sansom, M.S. 1994: Molecular dynamics studies of M2 helices of nicotinic acetylcholine receptors. Biochemical Society Transactions 22(2): 156s
Nilsson, L.; Elofsson, A.; Norberg, N. 1991: Molecular dynamics studies of a self splicing rna and some nucleotide fragments. Biophysical Journal 59(2 Part 2): 569A
Chiu, S.W.; Subramanian, S.; Jakobsson, E.; Mccammon, J.A. 1989: Molecular dynamics studies of gramicidin channel structure. Biophysical Journal 55(2 Part 2): 505A
Chiu S W.; Jakobsson, E. 1990: Molecular dynamics studies of ion movement in gramicidin channels. Biophysical Journal 57(2 Part 2): 98A
Tieleman, D.P.; Lopez Cascalez, J.J.; Berendsen, H.J.C. 1996: Molecular dynamics studies of lipids and proteins of the E coli outer membrane Pope and OmpF. Progress in Biophysics and Molecular Biology 65(Suppl 1): 127
Wymore, T.; Wong, T.C. 1998: Molecular dynamics studies of peptides in membrane mimic environments. Biophysical Journal 74(2 Part 2): A280
Izrailev, S.; Stepaniants, S.; Balsera, M.; Oono, Y.; Schulten, K. 1997: Molecular dynamics studies of protein-ligand adhesion in the avidin-biotin complex. Biophysical Journal 72(2 Part 2): A106
Van Gunsteren, Wilfred, F. 1993: Molecular dynamics studies of proteins. Current Opinion in Structural Biology 3(2): 277-281
Tan, R.K.Z.; Sprous, D.; Harvey, S.C. 1994: Molecular dynamics studies of supercoiled DNA Effects of sequence and linking difference on structural transitions. Biophysical Journal 66(2 Part 2): A156
Sprous, D.; Tan, R.K.Z.; Harvey, S.C. 1994: Molecular dynamics studies of supercoiled DNA Generation of thermodynamic ensembles. Biophysical Journal 66(2 Part 2): A156
Fennema, J.; Woolf, T.B. 1998: Molecular dynamics studies of type VI turn side-chain rotomer populations. Biophysical Journal 74(2 Part 2): A176
Chiu, S.W.; Subramanian, S.; Jakobsson, E.; Mccammon, J.A. 1989: Molecular dynamics studies of water structure and water and ion movement within the gramicidin channel. Biophysical Journal 55(2 Part 2): 504A
Vishveshwara, S.; Sankararamakrishnan, R. 1991: Molecular dynamics studies on helix f model of bacteriorhodopsin. Journal of Biomolecular Structure and Dynamics 8(6): A243
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Xu, D.; Sheves, M.; Schulten, K. 1994: Molecular dynamics study of bacteriorhodopsin M intermediate. Biophysical Journal 66(2 Part 2): A390
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Bishop, T.C.; Schulten, K. 1995: Molecular dynamics study of nuclear hormone receptor DNA binding. Biophysical Journal 68(2 Part 2): A300
Logunov, I.; Humphrey, W.; Schulten, K.; Sheves, M. 1994: Molecular dynamics study of the 13-cis photocycle of bacteriorhodopsin. Biophysical Journal 66(2 Part 2): A44
Ghosh, I.; Edholm, O. 1994: Molecular dynamics study of the binding of phenylalanine stereoisomers to thermolysin. Biophysical Chemistry 50(3): 237-248
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Bishop, T.; Schulten, K. 1994: Molecular dynamics study of the glucocorticoid receptor DNA binding domain dimer interacting with the consensus DNA response element. Biophysical Journal 66(2 Part 2): A187
Ma, X.; Zhu, W.; Xiao, J.; Xiao, H. 2008: Molecular dynamics study of the structure and performance of simple and double bases propellants. Journal of Hazardous Materials 156(1-3): 201-207
Smith, G.R.; Sansom, M.S.P. 1997: Molecular dynamics study of water and sodium ions in models of the pore region of the nicotinic acetylcholine receptor. Biophysical Journal 72(2 Part 2): A152
Sirk, T.W.; Brown, E.F.; Sum, A.K.; Friedman, M. 2008: Molecular dynamics study on the biophysical interactions of seven green tea catechins with lipid bilayers of cell membranes. Journal of Agricultural and Food Chemistry 56(17): 7750-7758
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Millinoff, D.; Boldogh, I.; Albrecht, T. 1992: Molecular effects of papaverine on human cytomegalovirus replication. Antiviral Research 17(Suppl 1): 106
Krajcovic, J.; Vacula, R.; Ebringer, L.; Stutz, E.; Loffelhardt, W. 1997: Molecular effects of some selected xenobiotics on the chloroplast system of Euglena gracilis. Phycologia 36(4 Suppl): 53
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Stahlberg, H.; Walz, T. 2008: Molecular electron microscopy: state of the art and current challenges. Acs Chemical Biology 3(5): 268-281
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Zong X G.; Dugas, M.; Honerjager, P. 1992: Molecular electrophysiology of veratridine action at the cardiac sodium channel. Naunyn-Schmiedeberg's Archives of Pharmacology 345(Suppl 1): R75
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Kimura, T.; Saji, F. 1995: Molecular Endocrinology of the oxytocin receptor. Endocrine Journal 42(5): 607-615
Summerton, J.; Matthews, P.; Partridge, M.; Weller, D.; Weller, D. 1997: Molecular engine for drug delivery. Abstracts of Papers American Chemical Society 213(1-3): MEDI 311
Summerton, J.; Mathews, P.; Partridge, M.; Foster, E.; Weller, D. 1996: Molecular engine for traversing lipid bilayers. Abstracts of Papers American Chemical Society 212(1-2): ORGN 192
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Parakh, C.R.; Cheung, L.; Rosenblum, M.G. 1996: Molecular engineering and design of an anti-melanoma immunotoxin. Proceedings of the American Association for Cancer Research 37: 472
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Benedetti, E. 1994: Molecular engineering in the preparation of bioactive peptides. Doniach, S NATO ASI Series Series B Physics; Statistical mechanistics, protein structure, and protein substrate interactions 381-400
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Shelnutt, J.A.; Ryba, G.N.; Hobbs, J.D.; Medforth, C.J.; Smith, K.M.; Miura, M. 1994: Molecular engineering of biomimetic catalysts for photo- and electrochemical conversion of CO-2. Abstracts of Papers American Chemical Society 207(1-2): BTEC 50
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Ozaki, Shin Ichi; De Montellano, Paul R. Ortiz 1994: Molecular engineering of horseradish peroxidase highly enantioselective sulfoxidation of aryl alkyl sulfides by the Phe-41 fwdarw leu mutant. Journal of the American Chemical Society 116(10): 4487-4488
Kishikawa, H.; Motoyoshi, S.; Shirotani, T.; Araki, E.; Matsumoto, K.; Shichiri, M. 1996: Molecular engineering of insulin secreting cells with glucose sensors. Diabetologia 39(Suppl 1): A20
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