Degenerate Primer IDs and the birthday problem
Sheward, D.J.; Murrell, B.; Williamson, C.
Proceedings of the National Academy of Sciences of the United States of America 109(21): E1330; Author Reply E1331
2012
ISSN/ISBN: 0027-8424 PMID: 22517746 DOI: 10.1073/pnas.1203613109
Accession: 052471415
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Related References
Linhart, C.; Shamir, R. 2002: The degenerate primer design problem Bioinformatics 18(Suppl 1): S172-S181Linhart, C.; Shamir, R. 2005: The degenerate primer design problem: theory and applications Journal of Computational Biology: a Journal of Computational Molecular Cell Biology 12(4): 431-456
Telenius, H.; Carter, N.P.; Bebb, C.E.; Nordenskjöld, M.; Ponder, B.A.; Tunnacliffe, A. 1992: Degenerate oligonucleotide-primed PCR: general amplification of target DNA by a single degenerate primer Genomics 13(3): 718-725
Rose, T.M.; Henikoff, J.G.; Henikoff, S. 2003: CODEHOP (COnsensus-DEgenerate Hybrid Oligonucleotide Primer) PCR primer design Nucleic Acids Research 31(13): 3763-3766
Nelson, M.S.; Levedakou, E.N.; Matthews, J.R.; Early, B.E.; Freeman, D.A.; Kuhn, C.A.; Sprecher, C.J.; Amin, A.S.; McElfresh, K.C.; Schumm, J.W. 2002: Detection of a primer-binding site polymorphism for the STR locus D16S539 using the Powerplex 1.1 system and validation of a degenerate primer to correct for the polymorphism Journal of Forensic Sciences 47(2): 345-349
Mollasalehi, H.; Yazdanparast, R. 2013: Development and evaluation of a novel nucleic acid sequence-based amplification method using one specific primer and one degenerate primer for simultaneous detection of Salmonella Enteritidis and Salmonella Typhimurium Analytica Chimica Acta 770: 169-174
Anirban DasGupta 2005: The matching, birthday and the strong birthday problem: a contemporary review Journal of Statistical Planning and Inference 130(1-2): 377-389
Wei, X.; Kuhn, D.N.; Narasimhan, G. 2003: Degenerate primer design via clustering Proceedings. IEEE Computer Society Bioinformatics Conference 2: 75-83
Gahoi, S.; Arya, L.; Anil, R.; Marla, S. 2013: DPPrimer - a Degenerate PCR Primer Design Tool Bioinformation 9(18): 937-940
Koch, W.H.; Woodgate, R. 1995: Identification of new umuC homologs by degenerate primer PCR amplification Journal of Cellular Biochemistry Suppl 1995(21A): 333
Ping, L.; Vogel, H.; Boland, W. 2008: Cloning of prokaryotic genes by a universal degenerate primer PCR Fems Microbiology Letters 287(2): 192-198
Le Guyader, F.; Estes, M.K.; Hardy, M.E.; Neill, F.H.; Green, J.; Brown, D.W.; Atmar, R.L. 1996: Evaluation of a degenerate primer for the PCR detection of human caliciviruses Archives of Virology 141(11): 2225-2235
Lane, C.E.; Hulgan, D.; O'Quinn, K.; Benton, M.G. 2015: CEMAsuite: open source degenerate PCR primer design Bioinformatics 31(22): 3688-3690
Li, K.; Shrivastava, S.; Stockwell, T.B. 2015: Degenerate primer design for highly variable genomes Methods in Molecular Biology 1275: 103-115
Nam, Y.R.; Lee, U.; Choi, H.S.; Lee, K.J.; Kim, N.; Jang, Y.J.; Joo, C.H. 2015: Degenerate PCR primer design for the specific identification of rhinovirus C Journal of Virological Methods 214: 15-24
Linhart, C.; Shamir, R. 2007: Degenerate primer design: theoretical analysis and the HYDEN program Methods in Molecular Biology 402: 221-244
Leclair, E.E.; Naylor, G.P. 1999: Comparative codehopping Testing a web-based tool for degenerate primer design American Zoologist 39(5): 78A
Yang, X.; Marchand, J.E. 2002: Optimal Ratio of Degenerate Primer Pairs Improves Specificity and Sensitivity of Pcr BioTechniques 32(5): 1002-1006
Singh, V.K.; Mangalam, A.K.; Dwivedi, S.; Naik, S. 1998: Primer premier: program for design of degenerate primers from a protein sequence Biotechniques 24(2): 318-319
Jindal, N.; Chander, Y.; de Abin, M.; Sreevatsan, S.; Stallknecht, D.; Halvorson, D.A.; Goyal, S.M. 2009: Amplification of four genes of influenza a viruses using a degenerate primer set in a one step RT-PCR method Journal of Virological Methods 160(1-2): 163-166