EurekaMag PDF full texts Chapter 54,991

Wang, S.; Li, X.; Wang, K.; Wang, X.; Li, S.; Zhang, Y.; Guo, G.; Zeller, F.J.; Hsam, S.L.K.; Yan, Y. 2011: Phylogenetic analysis of C, M, N, and U genomes and their relationships with Triticum and other related genomes as revealed by LMW-GS genes at Glu-3 loci. Genome 54(4): 273-284

Cao, L.; Chen, F.; Yang, X.; Xu, W.; Xie, J.; Yu, L. 2014: Phylogenetic analysis of CDK and cyclin proteins in premetazoan lineages. Bmc Evolutionary Biology 14: 10

Xu, Y.-M.; Zhang, S.-Q.; Zhu, C.-G. 2012: Phylogenetic analysis of CO i gene of Oncomelania snails from project of afforestation for schistosomiasis control in marshland endemic regions. Zhongguo Xue Xi Chong Bing Fang Zhi Za Zhi 24(2): 186-188; 192

Zhou, T.; Jia, H.; Chen, G.; He, X.; Fang, Y.; Wang, X.; Guan, Q.; Zeng, S.; Cui, Q.; Jing, Z. 2012: Phylogenetic analysis of Chinese sheeppox and goatpox virus isolates. Virology Journal 9: 25

Lutter, E.I.; Bonner, C.; Holland, M.J.; Suchland, R.J.; Stamm, W.E.; Jewett, T.J.; McClarty, G.; Hackstadt, T. 2010: Phylogenetic analysis of Chlamydia trachomatis Tarp and correlation with clinical phenotype. Infection and Immunity 78(9): 3678-3688

Jacobson, M.J.; Lin, G.; Whittam, T.S.; Johnson, E.A. 2008: Phylogenetic analysis of Clostridium botulinum type a by multi-locus sequence typing. Microbiology 154(Part 8): 2408-2415

Lojkic, I.; Cac, Z.; Beck, A.; Bedekovic, T.; Cvetnic, Z.; Sostaric, B. 2010: Phylogenetic analysis of Croatian orf viruses isolated from sheep and goats. Virology Journal 7: 314

Liu, Q.; Xue, Q.; Xu, J. 2014: Phylogenetic analysis of DNA demethylase genes in angiosperm. Yi Chuan 36(3): 276-285

Huang, Y.; Yang, L.; Wang, T. 2011: Phylogenetic analysis of DNA sequences based on the generalized pseudo-amino acid composition. Journal of Theoretical Biology 269(1): 217-223

Zhao, Y.-E.; Hu, L.; Ma, J.-X. 2013: Phylogenetic analysis of Demodex caprae based on mitochondrial 16S rDNA sequence. Parasitology Research 112(11): 3969-3977

Lévêque, N.; Jacques, Jérôme.; Renois, F.; Antona, D.; Abely, M.; Chomel, J-Jacques.; Andréoletti, L. 2010: Phylogenetic analysis of Echovirus 30 isolated during the 2005 outbreak in France reveals existence of multiple lineages and suggests frequent recombination events. Journal of Clinical Virology: the Official Publication of the Pan American Society for Clinical Virology 48(2): 137-141

Zhu, J.; Luo, Z.; Wang, J.; Xu, Z.; Chen, H.; Fan, D.; Gao, N.; Ping, G.; Zhou, Z.; Zhang, Y.; An, J. 2013: Phylogenetic analysis of Enterovirus 71 circulating in Beijing, China from 2007 to 2009. Plos one 8(2): E56318

Malirat, V.; Bergmann, I.Evelyn.; Campos, R.de.Mendonça.; Salgado, G.; Sánchez, C.; Conde, F.; Quiroga, Jé.Luis.; Ortiz, Són. 2011: Phylogenetic analysis of Foot-and-Mouth Disease Virus type O circulating in the Andean region of South America during 2002-2008. Veterinary microbiology 152(1-2): 74-87

Gómez, M.M.ín.; da Silva, M.F.M.; Zeller, M.; Heylen, E.; Matthijnssens, J.; Ichihara, M.Y.T.; Rose, T.L.; de Mello Volotão, E.; Leite, J.P.G. 2013: Phylogenetic analysis of G1P[6] group a rotavirus strains detected in Northeast Brazilian children fully vaccinated with Rotarix™. Infection Genetics and Evolution: Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases 19: 395-402

Engstrom, E.M. 2011: Phylogenetic analysis of GRAS proteins from moss, lycophyte and vascular plant lineages reveals that GRAS genes arose and underwent substantial diversification in the ancestral lineage common to bryophytes and vascular plants. Plant Signaling and Behavior 6(6): 850-854

Raleigh, P.J.; Flynn, O.; O'Connor, M.; Minihan, D.; Connell, J.; Sammin, D.J.; Markey, B.K. 2011: Phylogenetic analysis of H and N2 genes of avian influenza viruses detected in Ireland between 2003 and 2007. Epidemiology and Infection 139(8): 1191-1201

Flavia, G.B.A.; Natarajaseenivasan, K. 2011: Phylogenetic analysis of H1N1 sequences from pandemic infections during 2009 in India. Bioinformation 5(10): 416-421

Bai, Y.; Ma, T.; Yao, Y.; Dai, Q.; He, P.-a. 2014: Phylogenetic analysis of H7N9 avian influenza virus based on a novel mathematical descriptor. Biomed Research International 2014: 519787

Ciccozzi, M.; Zehender, G.; Polat, C.; Lai, A.; Kayman, T.; Sorrentino, C.; Ebranati, E.; Cella, E.; Lo Presti, A.; Abacioglu, H. 2014: Phylogenetic analysis of HCV-4d in Turkey: the curious case of Kayseri province. Journal of Medical Virology 86(3): 454-460

Lepej, S.Z.; Vrakela, I.B.; Poljak, M.; Bozicevic, I.; Begovac, J. 2009: Phylogenetic analysis of HIV sequences obtained in a respondent-driven sampling study of men who have sex with men. Aids Research and Human Retroviruses 25(12): 1335-1338

Paolucci, S.; Piralla, A.; Fiorina, L.; Gulminetti, R.; Novati, S.; Lai, A.; Baldanti, F. 2014: Phylogenetic analysis of HIV type 1 CRF02_AG in multiple genes in Italian and African patients living in Italy. Aids Research and Human Retroviruses 30(8): 812-818

Deshpande, A.; Jauvin, V.; Pinson, P.; Jeannot, A.C.; Fleury, H.J. 2009: Phylogenetic analysis of HIV-1 reverse transcriptase sequences from 382 patients recruited in JJ Hospital of Mumbai, India, between 2002 and 2008. Aids Research and Human Retroviruses 25(6): 633-635

Salih, B.A.; Bolek, B.Kazim.; Yildiz, M.Taha.; Arikan, S. 2013: Phylogenetic analysis of Helicobacter pylori cagA gene of Turkish isolates and the association with gastric pathology. Gut Pathogens 5(1): 33

Fan, X.; Liao, S.; Sha, L.-N.; Liu, J.; Wang, X.-L.; Zhou, Y.-H. 2009: Phylogenetic analysis of Hystrix and its related genera (Poaceae: Triticeae) based on the sequences of the gene encoding 3-phosphoglycerate kinase. Yi Chuan 31(10): 1049-1058

Sanyal, A.; Subramaniam, S.; Mohapatra, J.K.; Tamilselvan, R.P.; Singh, N.K.; Hemadri, D.; Pattnaik, B. 2010: Phylogenetic analysis of Indian serotype Asia1 foot-and-mouth-disease virus isolates revealed emergence and reemergence of different genetic lineages. Veterinary Microbiology 144(1-2): 198-202

Nyati, S.; Bhattacharya, D.; Werth, S.; Honegger, R. 2013: Phylogenetic analysis of LSU and SSU rDNA group i introns of lichen photobionts associated with the genera Xanthoria and Xanthomendoza (Teloschistaceae, lichenized Ascomycetes). Journal of Phycology 49(6)

Sha, L.-N.; Yang, R.-W.; Fan, X.; Wang, X.-L.; Zhou, Y.-H. 2008: Phylogenetic analysis of Leymus (Poaceae: Triticeae) inferred from nuclear rDNA ITS sequences. Biochemical Genetics 46(9-10): 605-619

Haapa-Paananen, S.; Wahlberg, N.; Savilahti, H. 2014: Phylogenetic analysis of Maverick/Polinton giant transposons across organisms. Molecular Phylogenetics and Evolution 78: 271-274

Brown, J.K.; Mills-Lujan, K.; Idris, A.M. 2011: Phylogenetic analysis of Melon chlorotic leaf curl virus from Guatemala: another emergent species in the Squash leaf curl virus clade. Virus Research 158(1-2): 257-262

Hashida, Y.; Imajoh, M.; Kamioka, M.; Taniguchi, A.; Kuroda, N.; Hayashi, K.; Nakajima, H.; Sano, S.; Daibata, M. 2014: Phylogenetic analysis of Merkel cell polyomavirus based on full-length LT and VP1 gene sequences derived from neoplastic tumours in Japanese patients. Journal of General Virology 95(Part 1): 135-141

Simmon, K.E.; Low, Y.Y.; Brown-Elliott, B.A.; Wallace, R.J.; Petti, C.A. 2009: Phylogenetic analysis of Mycobacterium aurum and Mycobacterium neoaurum with redescription of M. aurum culture collection strains. International Journal of Systematic and Evolutionary Microbiology 59(Part 6): 1371-1375

Zhou, R.-Q.; Nie, K.; Huang, H.-C.; Hu, S.-j.; Zhou, Z.-y.; Luo, H.-L. 2009: Phylogenetic analysis of Mycoplasma suis isolates based on 16S rRNA gene sequence in China. Veterinary Research Communications 33(8): 855-863

Feldman, S.H.; Ntenda, A.M. 2011: Phylogenetic analysis of Myobia musculi (Schranck, 1781) by using the 18S small ribosomal subunit sequence. Comparative Medicine 61(6): 484-491

Patil, S.S.; Hemadri, D.; Veeresh, H.; Sreekala, K.; Gajendragad, M.R.; Prabhudas, K. 2012: Phylogenetic analysis of NS5B gene of classical swine fever virus isolates indicates plausible Chinese origin of Indian subgroup 2.2 viruses. Virus Genes 44(1): 104-108

McDonagh, L.; García, R.; Stevens, J.R. 2009: Phylogenetic analysis of New World screwworm fly, Cochliomyia hominivorax, suggests genetic isolation of some Caribbean island populations following colonization from South America. Medical and Veterinary Entomology 23 Suppl. 1: 14-22

Timmerman-Vaughan, G.M.; Lister, R.; Cooper, R.; Tang, J. 2014: Phylogenetic analysis of New Zealand tomato spotted wilt virus isolates suggests likely incursion history scenarios and mechanisms for population evolution. Archives of Virology 159(5): 993-1003

Jindal, N.; Chander, Y.; Chockalingam, A.K.; de Abin, M.; Redig, P.T.; Goyal, S.M. 2009: Phylogenetic analysis of Newcastle disease viruses isolated from waterfowl in the upper midwest region of the United States. Virology Journal 6: 191

Yang, L.-L.; Zhi, X.-Y.; Li, W.-J. 2007: Phylogenetic analysis of Nocardiopsis species based on 16S rRNA, gyrB, sod and rpoB gene sequences. Wei Sheng Wu Xue Bao 47(6): 951-955

Chaimanee, V.; Chen, Y.; Pettis, J.S.; Scott Cornman, R.; Chantawannakul, P. 2011: Phylogenetic analysis of Nosema ceranae isolated from European and Asian honeybees in Northern Thailand. Journal of Invertebrate Pathology 107(3): 229-233

Møller, A.B.; Asp, T.; Holm, P.B.; Palmgren, M.G. 2008: Phylogenetic analysis of P5 P-type ATPases, a eukaryotic lineage of secretory pathway pumps. Molecular Phylogenetics and Evolution 46(2): 619-634

Li, X.-Y.; Bian, Q.-Q.; Zhao, G.-H. 2015: Phylogenetic analysis of Pomacea canaliculata isolates collected from rice fields in different origins of China by combined mitochondrial 12S and 16S genes. Mitochondrial Dna 26(1): 27-31

Schmidt-Lebuhn, A.N.; de Vos, J.M.; Keller, B.; Conti, E. 2012: Phylogenetic analysis of Primula section Primula reveals rampant non-monophyly among morphologically distinct species. Molecular Phylogenetics and Evolution 65(1): 23-34

Kammarnjesadakul, P.; Palaga, T.; Sritunyalucksana, K.; Mendoza, L.; Krajaejun, T.; Vanittanakom, N.; Tongchusak, S.; Denduangboripant, J.; Chindamporn, A. 2011: Phylogenetic analysis of Pythium insidiosum Thai strains using cytochrome oxidase Ii (COX II) DNA coding sequences and internal transcribed spacer regions (ITS). Medical Mycology 49(3): 289-295

Teramoto, K.; Kitagawa, W.; Sato, H.; Torimura, M.; Tamura, T.; Tao, H. 2009: Phylogenetic analysis of Rhodococcus erythropolis based on the variation of ribosomal proteins as observed by matrix-assisted laser desorption ionization-mass spectrometry without using genome information. Journal of Bioscience and Bioengineering 108(4): 348-353

Yan, F.; Zhao, Y.; Yue, W.; Yao, J.; Lihua, L.; Ji, W.; Li, X.; Liu, F.; Wu, Q. 2011: Phylogenetic analysis of S1 gene of infectious bronchitis virus isolates from China. Avian Diseases 55(3): 451-458

Zhou, T.; Fan, M.; Irfan, M.; Wang, H.; Wang, D.; Wang, L.; Zhang, C.; Feng, L. 2014: Phylogenetic analysis of STK gene family and Usp domain in maize. Molecular Biology Reports 41(12): 8273-8284

Abdelbary, M.M.H.; Wittenberg, A.; Cuny, C.; Layer, F.; Kurt, K.; Wieler, L.H.; Walther, B.; Skov, R.; Larsen, J.; Hasman, H.; Fitzgerald, J.R.; Smith, T.C.; Wagenaar, J.A.; Pantosti, A.; Hallin, M.; Struelens, M.J.; Edwards, G.; Böse, R.; Nübel, U.; Witte, W. 2014: Phylogenetic analysis of Staphylococcus aureus CC398 reveals a sub-lineage epidemiologically associated with infections in horses. Plos one 9(2): E88083

Cerezer, V.Godoy.; Bando, S.Yumi.; Pasternak, J.; Franzolin, M.Regina.; Moreira-Filho, C.Alberto. 2014: Phylogenetic analysis of Stenotrophomonas spp. isolates contributes to the identification of nosocomial and community-acquired infections. Biomed Research International 2014: 151405

Corse, E.; Rampal, J.; Cuoc, C.; Pech, N.; Perez, Y.; Gilles, A.é 2013: Phylogenetic analysis of Thecosomata Blainville, 1824 (holoplanktonic opisthobranchia) using morphological and molecular data. Plos one 8(4): E59439

Almási, A.ér.; Csilléry, G.áb.; Csömör, Z.óf.; Nemes, K.; Palkovics, L.ás.ó; Salánki, K.; Tóbiás, I.án. 2015: Phylogenetic analysis of Tomato spotted wilt virus (TSWV) NSs protein demonstrates the isolated emergence of resistance-breaking strains in pepper. Virus Genes 50(1): 71-78

Hussain, T.; Manzoor, S.; Waheed, Y.; Tariq, H.; Hanif, K. 2012: Phylogenetic analysis of Torque Teno Virus genome from Pakistani isolate and incidence of co-infection among HBV/HCV infected patients. Virology Journal 9: 320

Irbis, C.; Garriga, R.; Kabasawa, A.; Ushida, K. 2008: Phylogenetic analysis of Troglodytella abrassarti isolated from Chimpanzees (Pan troglodytes verus) in the wild and in captivity. Journal of General and Applied Microbiology 54(6): 409-413

da Silva, M.Figueira.Marques.; Tort, L.Fernando.López.; Gómez, M.Martínez.; Assis, R.M.Santos.; de Mendonça, M.César.Lima.; Volotão, E.de.Mello.; Leite, Jé.Paulo.G. 2011: Phylogenetic analysis of VP1, VP2, and VP3 gene segments of genotype G5 group A rotavirus strains circulating in Brazil between 1986 and 2005. Virus Research 160(1-2): 381-388

Shah-Hosseini, N.; Chinikar, S.; Ataei, B.; Fooks, A.R.; Groschup, M.H. 2014: Phylogenetic analysis of West Nile virus genome, Iran. Emerging Infectious Diseases 20(8): 1419-1421

Rossini, G.; Carletti, F.; Bordi, L.; Cavrini, F.; Gaibani, P.; Landini, M.P.; Pierro, A.; Capobianchi, M.R.; Di Caro, A.; Sambri, V. 2011: Phylogenetic analysis of West Nile virus isolates, Italy, 2008-2009. Emerging infectious diseases 17(5): 903-906

Da Silva Medeiros, T.N.; Lorenzetti, E.; Alfieri, A.F.; Alfieri, A.A. 2015: Phylogenetic analysis of a G6P[5] bovine rotavirus strain isolated in a neonatal diarrhea outbreak in a beef cattle herd vaccinated with G6P[1] and G10P[11] genotypes. Archives of Virology 160(2): 447-451

Duffus, A.L.J.; Andrews, A.M. 2013: Phylogenetic analysis of a frog virus 3-like ranavirus found at a site with recurrent mortality and morbidity events in southeastern Ontario, Canada: partial major capsid protein sequence alone is not sufficient for fine-scale differentiation. Journal of Wildlife Diseases 49(2): 464-467

Gazi, A.D.; Sarris, P.F.; Fadouloglou, V.E.; Charova, S.N.; Mathioudakis, N.; Panopoulos, N.J.; Kokkinidis, M. 2012: Phylogenetic analysis of a gene cluster encoding an additional, rhizobial-like type III secretion system that is narrowly distributed among Pseudomonas syringae strains. Bmc Microbiology 12: 188

Schneider, D.; Arp, G.; Reimer, A.; Reitner, J.; Daniel, R. 2013: Phylogenetic analysis of a microbialite-forming microbial mat from a hypersaline lake of the Kiritimati atoll, Central Pacific. Plos one 8(6): E66662

Keller, L.W.; Barbosa, M.L.; Melo, F.L.; Pereira, L.M.; David-Neto, E.; Lanhez, L.E.; Durigon, E.L. 2009: Phylogenetic analysis of a near-full-length sequence of an erythrovirus genotype 3 strain isolated in Brazil. Archives of Virology 154(10): 1685-1687

Bellière, E.N.; Esperón, F.; Fernández, A.; Arbelo, M.; Muñoz, M.J.; Sánchez-Vizcaíno, J.M. 2011: Phylogenetic analysis of a new Cetacean morbillivirus from a short-finned pilot whale stranded in the Canary Islands. Research in Veterinary Science 90(2): 324-328

Dencs, A.; Farkas, A.; Gyugos, M.ón.; Kurcz, A.; Puskás, E.éb.; Tresó, B.; Rusvai, E.éb.; Barcsay, E.éb.; Takács, M.ár. 2011: Phylogenetic analysis of a nosocomial transmission of hepatitis B virus at a paediatric haematology ward. Acta Microbiologica et Immunologica Hungarica 58(1): 23-29

Fan, Z.; Ci, Y.; Ma, Y.; Liu, L.; Wang, D.; Ma, J.; Li, Y.; Chen, H. 2014: Phylogenetic analysis of a novel H6N6 avian influenza virus isolated from a green peafowl in China and its pathogenic potential in mice. Infection Genetics and Evolution: Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases 28: 107-112

Illeghems, K.; De Vuyst, L.; Papalexandratou, Z.; Weckx, S. 2012: Phylogenetic analysis of a spontaneous cocoa bean fermentation metagenome reveals new insights into its bacterial and fungal community diversity. Plos one 7(5): E38040

Kim, J.I.; Lee, I.; Park, S.; Lee, S.; Hwang, M.-W.; Bae, J.-Y.; Heo, J.; Kim, D.; Jang, S.-I.; Kim, K.; Park, M.-S. 2014: Phylogenetic analysis of a swine influenza A(H3N2) virus isolated in Korea in 2012. Plos one 9(2): E88782

Toledo, A.; Anda, P.; Escudero, R.; Larsson, C.; Bergstrom, S.; Benach, J.L. 2010: Phylogenetic analysis of a virulent Borrelia species isolated from patients with relapsing fever. Journal of Clinical Microbiology 48(7): 2484-2489

Vogel, M.; van de Laar, T.; Kupfer, B.; Stellbrink, H.-J.ür.; Kümmerle, T.; Mauss, S.; Knecht, G.; Berger, A.; Bruisten, S.; Rockstroh, J.ür.K. 2010: Phylogenetic analysis of acute hepatitis C virus genotype 4 infections among human immunodeficiency virus-positive men who have sex with men in Germany. Liver International: Official Journal of the International Association for the Study of the Liver 30(8): 1169-1172

Harrach, B.áz.; Benko, M.ár. 2007: Phylogenetic analysis of adenovirus sequences. Methods in Molecular Medicine 131: 299-334

Kim, E.; Lin, Y.; Kerney, R.; Blumenberg, L.; Bishop, C. 2014: Phylogenetic analysis of algal symbionts associated with four North American amphibian egg masses. PloS one 9(11): e108915

Dapat, C.; Suzuki, Y.; Kon, M.; Tamura, T.; Saito, R.; Dapat, I.C.; Yamazaki, O.; Odagiri, T.; Fujisaki, S.; Suzuki, H. 2011: Phylogenetic analysis of an off-seasonal influenza virus a (H3N2) in Niigata, Japan, 2010. Japanese Journal of Infectious Diseases 64(3): 237-241

Ho, S.Y.W. 2012: Phylogenetic analysis of ancient DNA using BEAST. Methods in Molecular Biology 840: 229-241

Bourouni, O.C.; El Bour, M.; Calo-Mata, P.; Mraouna, R.; Abedellatif, B.; Barros-Velàzquez, J. 2012: Phylogenetic analysis of antimicrobial lactic acid bacteria from farmed seabass Dicentrarchus labrax. Canadian Journal of Microbiology 58(4): 463-474

Choi, S.; Lim, S.-I.; Kim, Y.K.; Cho, Y.-Y.; Song, J.-Y.; An, D.-J. 2014: Phylogenetic analysis of astrovirus and kobuvirus in Korean dogs. Journal of Veterinary Medical Science 76(8): 1141-1145

Maki, T.; Susuki, S.; Kobayashi, F.; Kakikawa, M.; Tobo, Y.; Yamada, M.; Higashi, T.; Matsuki, A.; Hong, C.; Hasegawa, H.; Iwasaka, Y. 2010: Phylogenetic analysis of atmospheric halotolerant bacterial communities at high altitude in an Asian dust (KOSA) arrival region, Suzu City. Science of the Total Environment 408(20): 4556-4562

Marek, A.; Bilic, I.; Prokofieva, I.; Hess, M. 2010: Phylogenetic analysis of avian hepatitis e virus samples from European and Australian chicken flocks supports the existence of a different genus within the Hepeviridae comprising at least three different genotypes. Veterinary Microbiology 145(1-2): 54-61

Karamendin, K.; Kydyrmanov, A.; Zhumatov, K.; Asanova, S.; Ishmukhametova, N.; Sayatov, M. 2011: Phylogenetic analysis of avian influenza viruses of H11 subtype isolated in Kazakhstan. Virus Genes 43(1): 46-54

Romanovskaia, V.A.; Parfenova, V.V.; Bel'kova, N.L.; Sukhanova, E.V.; Gladka, G.V.; Tashireva, A.A. 2014: Phylogenetic analysis of bacteria of extreme ecosystems. Mikrobiolohichnyi Zhurnal 76(3): 2-10

Fang, W.; Fang, Z.; Liu, Z.; Yuan, J.; Zhang, X.; Peng, H.; Hong, Y.; Xiao, Y. 2013: Phylogenetic analysis of bacterial community in the gut of American cockroach (Periplaneta americana). Wei Sheng Wu Xue Bao 53(9): 984-994

Liu, D.; Leib, K.; Zhao, P.; Kogel, K.-H.; Langen, G. 2014: Phylogenetic analysis of barley WRKY proteins and characterization of HvWRKY1 and -2 as repressors of the pathogen-inducible gene HvGER4c. Molecular Genetics and Genomics: Mgg 289(6): 1331-1345

Eastwood, J.R.; Berg, M.L.; Ribot, R.F.H.; Raidal, S.R.; Buchanan, K.L.; Walder, K.R.; Bennett, A.T.D. 2014: Phylogenetic analysis of beak and feather disease virus across a host ring-species complex. Proceedings of the National Academy of Sciences of the United States of America 111(39): 14153-14158

Moody, N.J.G.; Horwood, P.F.; Reynolds, A.; Mahony, T.J.; Anderson, I.G.; Oakey, H.J. 2009: Phylogenetic analysis of betanodavirus isolates from Australian finfish. Diseases of Aquatic Organisms 87(3): 151-160

Aparna, M.; Vimalkumar, M.B.; Varghese, S.; Senthilvel, K.; Ajithkumar, K.G.; Raji, K.; Syamala, K.; Priya, M.N.; Deepa, C.K.; Jyothimol, G.; Juliet, S.; Chandrasekhar, L.; Ravindran, R. 2013: Phylogenetic analysis of bovine Theileria spp. isolated in south India. Tropical Biomedicine 30(2): 281-290

Oem, J.-K.; An, D.-J. 2014: Phylogenetic analysis of bovine astrovirus in Korean cattle. Virus Genes 48(2): 372-375

Moratorio, G.; Obal, G.; Dubra, A.; Correa, Aín.; Bianchi, S.; Buschiazzo, A.; Cristina, J.; Pritsch, O. 2010: Phylogenetic analysis of bovine leukemia viruses isolated in South America reveals diversification in seven distinct genotypes. Archives of Virology 155(4): 481-489

Szczerba-Turek, A.; Siemionek, J.; Bancerz-Kisiel, A.; Raś, A.; Szweda, W. 2011: Phylogenetic analysis of bovine papillomavirus E5 detected in equine sarcoids in Poland. Polish Journal of Veterinary Sciences 14(4): 653-654

Gao, S.; Du, J.; Li, Y.; Li, Y.; Shao, J.; Lin, T.; Cong, G.; Zhao, F.; Liu, L.; Chang, H.; Luo, J.; Yin, H. 2014: Phylogenetic analysis of bovine viral diarrhea virus of subgenotype 1c. Infection Genetics and Evolution: Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases 26: 168-171

Bi, Z.; Wang, Y.; Wang, X.; Xia, X. 2015: Phylogenetic analysis of canine distemper virus in domestic dogs in Nanjing, China. Archives of Virology 160(2): 523-527

Billinis, C.; Athanasiou, L.V.; Valiakos, G.; Mamuris, Z.; Birtsas, P.; Spyrou, V. 2013: Phylogenetic analysis of canine distemper viruses from red foxes, Greece. Veterinary Record 173(8): 194

Majer-Dziedzic, B.; Jakubczak, A.; Zietek, J. 2011: Phylogenetic analysis of canine parvovirus CPV-2 strains and its variants isolated in Poland. Polish Journal of Veterinary Sciences 14(3): 379-384

Xu, J.; Guo, H.-C.; Wei, Y.-Q.; Shu, L.; Wang, J.; Li, J.-S.; Cao, S.-Z.; Sun, S.-Q. 2015: Phylogenetic analysis of canine parvovirus isolates from Sichuan and Gansu provinces of China in 2011. Transboundary and Emerging Diseases 62(1): 91-95

Mukhopadhyay, H.K.; Matta, S.L.; Amsaveni, S.; Antony, P.X.; Thanislass, J.; Pillai, R.M. 2014: Phylogenetic analysis of canine parvovirus partial VP2 gene in India. Virus Genes 48(1): 89-95

Selvaraj, D.; Sarma, R.K.; Sathishkumar, R. 2008: Phylogenetic analysis of chloroplast matK gene from Zingiberaceae for plant DNA barcoding. Bioinformation 3(1): 24-27

Araínga, M.; Hisanaga, T.; Hills, K.; Handel, K.; Rivera, H.; Pasick, J. 2010: Phylogenetic analysis of classical swine fever virus isolates from Peru. Transboundary and Emerging Diseases 57(4): 262-270

Lv, Q.; Chen, M.; Xu, H.; Song, Y.; Sun, Z.; Dan, T.; Sun, T. 2013: Phylogenetic analysis of closely related Leuconostoc citreum species based on partial housekeeping genes. Wei Sheng Wu Xue Bao 53(7): 669-676

Lavrent'ev, M.V.; Prilipov, A.G.; Khutoretskaia, N.V.; Butenko, A.M.; L'vov, D.K. 2008: Phylogenetic analysis of complete nucleotide sequence of a snowshoe hare (Lepus americanus) virus genome. Voprosy Virusologii 53(5): 31-36

Zhu, F.; Shen, Z.; Xu, X.; Tao, H.; Dong, S.; Tang, X.; Xu, L. 2010: Phylogenetic analysis of complete rRNA gene sequence of Nosema philosamiae isolated from the lepidopteran Philosamia cynthia ricini. Journal of Eukaryotic Microbiology 57(3): 294-296

Shaik, A.P.; Alsaeed, A.H.; Kiranmayee, S.; Bammidi, V.; Sultana, A. 2013: Phylogenetic analysis of cubilin (CUBN) gene. Bioinformation 9(1): 29-36

Velmurugan, N.; Kalpana, D.; Cho, J.-Y.; Lee, G.-H.; Park, S.-H.; Lee, Y.-S. 2011: Phylogenetic analysis of culturable marine bacteria in sediments from the South Korean Yellow Sea. Mikrobiologiia 80(2): 275-286

Agumava, A.A.; Chikobava, M.G.; Lapin, B.A.; Tonkonozhenko, O.A.; Pavlovsky, A.N. 2011: Phylogenetic analysis of cytomegaloviruses isolated from man and different primate species. Voprosy Virusologii 56(2): 28-32

Kotaki, T.; Yamanaka, A.; Mulyatno, K.C.; Labiqah, A.; Sucipto, T.H.; Churrotin, S.; Soegijanto, S.; Konishi, E.; Kameoka, M. 2014: Phylogenetic analysis of dengue virus type 3 strains primarily isolated in 2013 from Surabaya, Indonesia. Japanese Journal of Infectious Diseases 67(3): 227-229

Añez, G.án.; Heisey, D.A.R.; Espina, L.M.; Stramer, S.L.; Rios, M. 2012: Phylogenetic analysis of dengue virus types 1 and 4 circulating in Puerto Rico and Key West, Florida, during 2010 epidemics. American Journal of Tropical Medicine and Hygiene 87(3): 548-553

Salipante, S.J.; Kas, A.; McMonagle, E.; Horwitz, M.S. 2010: Phylogenetic analysis of developmental and postnatal mouse cell lineages. Evolution and Development 12(1): 84-94

Yap, F.Choy.; Yan, Y.Jin.; Loon, K.Teh.; Zhen, J.Lee.Ning.; Kamau, N.Warau.; Kumaran, J.Vijaya. 2010: Phylogenetic analysis of different breeds of domestic chickens in selected area of Peninsular Malaysia inferred from partial cytochrome b gene information and RAPD markers. Animal Biotechnology 21(4): 226-240

Rajilić-Stojanović, M.; Shanahan, F.; Guarner, F.; de Vos, W.M. 2013: Phylogenetic analysis of dysbiosis in ulcerative colitis during remission. Inflammatory Bowel Diseases 19(3): 481-488

White, G.S.; Pickett, B.E.; Lefkowitz, E.J.; Johnson, A.G.; Ottendorfer, C.; Stark, L.M.; Unnasch, T.R. 2011: Phylogenetic analysis of eastern equine encephalitis virus isolates from Florida. American Journal of Tropical Medicine and Hygiene 84(5): 709-717

Jenke, C.; Harmsen, D.; Weniger, T.; Rothganger, J.; Hyytia-Trees, E.; Bielaszewska, M.; Karch, H.; Mellmann, A. 2010: Phylogenetic analysis of enterohemorrhagic Escherichia coli O157, Germany, 1987-2008. Emerging infectious diseases 16(4): 610-616

Koshel, E.I.; Aleshin, V.V.; Eroshenko, G.A.; Kutyrev, V.V. 2014: Phylogenetic analysis of entomoparasitic nematodes, potential control agents of flea populations in natural foci of plague. Biomed Research International 2014: 135218

Becker, A.A.M.J.; Hesta, M.; Hollants, J.; Janssens, G.P.J.; Huys, G. 2014: Phylogenetic analysis of faecal microbiota from captive cheetahs reveals underrepresentation of Bacteroidetes and Bifidobacteriaceae. Bmc Microbiology 14: 43

An, D.-J.; Jeong, W.; Jeoung, H.-Y.; Yoon, S.H.; Kim, H.-J.; Park, J.-Y.; Park, B.-K. 2011: Phylogenetic analysis of feline panleukopenia virus (FPLV) strains in Korean cats. Research in Veterinary Science 90(1): 163-167

Mase, M.; Nakamura, K. 2014: Phylogenetic analysis of fowl adenoviruses isolated from chickens with gizzard erosion in Japan. Journal of Veterinary Medical Science 76(11): 1535-1538

Cho, Y.-K.; Jung, Y.-S.; Foley, B.T. 2011: Phylogenetic analysis of full-length pol gene from Korean hemophiliacs and plasma donors infected with Korean subclade B of HIV type 1. Aids Research and Human Retroviruses 27(6): 613-621

Kovalchuk, A.; Driessen, A.J.M. 2010: Phylogenetic analysis of fungal ABC transporters. Bmc Genomics 11: 177

Chaturvedi, N.; Pandey, P.N. 2014: Phylogenetic analysis of gammaproteobacterial arsenate reductase proteins specific to Enterobacteriaceae family, signifying arsenic toxicity. Interdisciplinary Sciences Computational Life Sciences 6(1): 57-62

Rosic, N.N. 2012: Phylogenetic analysis of genes involved in mycosporine-like amino acid biosynthesis in symbiotic dinoflagellates. Applied Microbiology and Biotechnology 94(1): 29-37

Kuleshov, K.V.; Markelov, M.L.; Dedkov, V.G.; Vodop'ianov, A.S.; Kermanov, A.V.; Pisanov, R.V.; Kruglikov, V.D.; Mazrukho, A.B.; Maleev, V.V.; Shipulin, G.A. 2013: Phylogenetic analysis of genomes of Vibrio cholerae strains isolated on the territory of Rostov region. Zhurnal Mikrobiologii Epidemiologii i Immunobiologii 6: 13-20

Argimón, S.; Alekseyenko, A.V.; DeSalle, R.; Caufield, P.W. 2013: Phylogenetic analysis of glucosyltransferases and implications for the coevolution of mutans streptococci with their mammalian hosts. Plos one 8(2): E56305

Smart, H.C.; Mast, F.D.; Chilije, M.F.J.; Tavassoli, M.; Dacks, J.B.; Zaremberg, V. 2014: Phylogenetic analysis of glycerol 3-phosphate acyltransferases in opisthokonts reveals unexpected ancestral complexity and novel modern biosynthetic components. Plos one 9(10): E110684

Saitoh, Y.; Izumitsu, K.; Tanaka, C. 2009: Phylogenetic analysis of heavy-metal ATPases in fungi and characterization of the copper-transporting ATPase of Cochliobolus heterostrophus. Mycological Research 113(Part: 6-7): 737-745

Arafa, A.; Suarez, D.L.; Hassan, M.K.; Aly, M.M. 2010: Phylogenetic analysis of hemagglutinin and neuraminidase genes of highly pathogenic avian influenza H5N1 Egyptian strains isolated from 2006 to 2008 indicates heterogeneity with multiple distinct sublineages. Avian Diseases 54(1 Suppl): 345-349

Chen, F.; Yan, Z.-Q.; Liu, J.; Ji, J.; Chang, S.; Liu, D.; Qin, J.-P.; Ma, J.-Y.; Bi, Y.-Z.; Xie, Q.-M. 2012: Phylogenetic analysis of hemagglutinin genes of 40 H9N2 subtype avian influenza viruses isolated from poultry in China from 2010 to 2011. Virus Genes 45(1): 69-75

Perk, S.; Golender, N.; Banet-Noach, C.; Shihmanter, E.; Pokamunsky, S.; Pirak, M.; Tendler, Y.; Lipkind, M.; Panshin, A. 2009: Phylogenetic analysis of hemagglutinin, neuraminidase, and nucleoprotein genes of H9N2 avian influenza viruses isolated in Israel during the 2000-2005 epizootic. Comparative Immunology Microbiology and Infectious Diseases 32(3): 221-238

Fujiwara, K.; Kojima, H.; Yonemitsu, Y.; Yasui, S.; Imazeki, F.; Miki, M.; Suzuki, K.; Sakaida, I.; Okita, K.; Tanaka, E.; Omata, M.; Yokosuka, O. 2009: Phylogenetic analysis of hepatitis a virus in sera from patients with hepatitis a of various severities. Liver International: Official Journal of the International Association for the Study of the Liver 29(6): 838-845

Pourkarim, M.R.; Verbeeck, J.; Rahman, M.; Amini-Bavil-Olyaee, S.; Forier, A.-M.; Lemey, P.; Maes, P.; Van Ranst, M. 2009: Phylogenetic analysis of hepatitis B virus full-length genomes reveals evidence for a large nosocomial outbreak in Belgium. Journal of Clinical Virology: the Official Publication of the Pan American Society for Clinical Virology 46(1): 61-68

Venegas, M.; Alvarado-Mora, M.ón.V.; Villanueva, R.A.; Rebello Pinho, J.ão.R.; Carrilho, F.J.; Locarnini, S.; Yuen, L.; Brahm, J. 2011: Phylogenetic analysis of hepatitis B virus genotype F complete genome sequences from Chilean patients with chronic infection. Journal of Medical Virology 83(9): 1530-1536

Salehi Moghadam, F.; Mohebbi, S.R.; Hosseini, S.M.; Romani, S.; Mirtalebi, H.; Azimzadeh, P.; Damavand, B.; Naghoosi, H.; Khanyaghma, M.; Sanati, A.; Zali, M.R. 2014: Phylogenetic analysis of hepatitis C virus strains and risk factors associated with infection and viral subtypes among Iranian patients. Journal of Medical Virology 86(8): 1342-1349

Oliveira-Filho, E.F.; Bank-Wolf, B.R.; Thiel, H.-J.ür.; König, M. 2014: Phylogenetic analysis of hepatitis e virus in domestic swine and wild boar in Germany. Veterinary Microbiology 174(1-2): 233-238

Xia, Y.-g.; Hu, A.-q.; Lu, Y.-h.; Liu, H.-y.; Zheng, Y.-j. 2010: Phylogenetic analysis of hepatitis e virus strains isolated from both human and swine in Anqing City. Zhonghua Yu Fang Yi Xue Za Zhi 44(10): 888-892

Singh, P.; Kaushik, M.Singh.; Srivastava, M.; Mishra, A.Kumar. 2014: Phylogenetic analysis of heterocystous cyanobacteria (Subsections IV and V) using highly iterated palindromes as molecular markers. Physiology and Molecular Biology of Plants: An International Journal of Functional Plant Biology 20(3): 331-342

Marcet-Houben, M.; Cabré, M.; Paternáin, J.é L.; Romeu, A. 2008: Phylogenetic analysis of homologous fatty acid synthase and polyketide synthase involved in aflatoxin biosynthesis. Bioinformation 3(1): 33-40

Tort, L.F.L.óp.; Volotão, E.d.M.; de Mendonça, M.C.és.L.; da Silva, M.F.M.; Siqueira, A.A.; Assis, R.M.S.; Moratorio, G.; Cristina, J.; Leite, J.é P.G. 2010: Phylogenetic analysis of human P[8]G9 rotavirus strains circulating in Brazil reveals the presence of a novel genetic variant. Journal of Clinical Virology: the Official Publication of the Pan American Society for Clinical Virology 47(4): 345-355

Machado, L.Y.; Navea, L.M.; Díaz, H.éc.M.; Blanco, M.; Dubed, M.; Romay, D.M.; Silva, E.; Pérez, L.J. 2013: Phylogenetic analysis of human T cell lymphotropic virus type 1 isolated from Cuban individuals. Aids Research and Human Retroviruses 29(8): 1168-1172

Nadji, S.A.; Poos-Ashkan, L.; Khalilzadeh, S.; Baghaie, N.; Shiraghaei, M.J.; Hassanzad, M.; Bolursaz, M.R. 2010: Phylogenetic analysis of human bocavirus isolated from children with acute respiratory illnesses and gastroenteritis in Iran. Scandinavian Journal of Infectious Diseases 42(8): 598-603

Minosse, C.; Selleri, M.; Zaniratti, M.S.; Cappiello, G.; Spanò, A.; Schifano, E.; Lauria, F.N.; Gualano, G.; Puro, V.; Campanini, G.; Gerna, G.; Capobianchi, M.R. 2008: Phylogenetic analysis of human coronavirus NL63 circulating in Italy. Journal of Clinical Virology: the Official Publication of the Pan American Society for Clinical Virology 43(1): 114-119

Duri, K.; Gumbo, F.; Kristiansen, K.; Mapingure, M.; Munjoma, M.; Chirenje, M.; Rusakaniko, S.; Stray-Pedersen, B.; Műller, F. 2012: Phylogenetic analysis of human immunodeficiency virus type 1 subtype C env gp120 sequences among four drug-naive families following subsequent heterosexual and vertical transmissions. Aids Research and Human Retroviruses 28(8): 885-893

Machado, L.Y.; Díaz, H.éc.M.; Noa, E.; Martín, D.í; Blanco, M.; Díaz, D.F.; Sánchez, Y.R.; Nibot, C.; Sánchez, L.; Dubed, M. 2014: Phylogenetic analysis of human immunodeficiency virus type 2 isolated from Cuban individuals. Aids Research and Human Retroviruses 30(8): 823-826

Nor'e, S.S.; Sam, I.C.; Mohamad Fakri, E.F.; Hooi, P.S.; Nathan, A.M.; de Bruyne, J.A.; Jafar, F.; Hassan, A.; AbuBakar, S.; Chan, Y.F. 2014: Phylogenetic analysis of human metapneumovirus among children with acute respiratory infections in Kuala Lumpur, Malaysia. Tropical Biomedicine 31(3): 562-566

Lamson, D.M.; Griesemer, S.; Fuschino, M.; St George, K. 2012: Phylogenetic analysis of human metapneumovirus from New York State patients during February through April 2010. Journal of Clinical Virology: the Official Publication of the Pan American Society for Clinical Virology 53(3): 256-258

Toda, S.; Kimura, H.; Noda, M.; Mizuta, K.; Matsumoto, T.; Suzuki, E.; Shirabe, K. 2010: Phylogenetic analysis of human metapneumovirus from children with acute respiratory infection in Yamaguchi, Japan, during summer 2009. Japanese Journal of Infectious Diseases 63(2): 139-140

Hübschen, J.M.; Mihneva, Z.; Mentis, A.F.; Schneider, F.ço.; Aboudy, Y.; Grossman, Z.; Rudich, H.; Kasymbekova, K.; Sarv, I.; Nedeljkovic, J.; Tahita, M.C.; Tarnagda, Z.; Ouedraogo, J.-B.; Gerasimova, A.G.; Moskaleva, T.N.; Tikhonova, N.T.; Chitadze, N.; Forbi, J.C.; Faneye, A.O.; Otegbayo, J.A.; Charpentier, E.; Muller, C.P. 2009: Phylogenetic analysis of human parvovirus b19 sequences from eleven different countries confirms the predominance of genotype 1 and suggests the spread of genotype 3b. Journal of Clinical Microbiology 47(11): 3735-3738

Daleno, C.; Piralla, A.; Scala, A.; Senatore, L.; Principi, N.; Esposito, S. 2013: Phylogenetic analysis of human rhinovirus isolates collected from otherwise healthy children with community-acquired pneumonia during five successive years. Plos one 8(11): E80614

Meiji-Soe-Aung; Tin-Sabai-Aung; Khin-Yi-Oo; Ne-Win; Ghosh, S.; Yamamoto, D.; Kobayashi, N. 2010: Phylogenetic analysis of human rotavirus in Myanmar: detection of Indian-Bangladeshi G1/G2 lineages, Chinese G3 lineage and OP354-like P[8] lineage (P[8]b subtype). Southeast Asian Journal of Tropical Medicine and Public Health 41(6): 1393-1404

Sun, C.; Han, Z.; Ma, H.; Zhang, Q.; Yan, B.; Shao, Y.; Xu, J.; Kong, X.; Liu, S. 2011: Phylogenetic analysis of infectious bronchitis coronaviruses newly isolated in China, and pathogenicity and evaluation of protection induced by Massachusetts serotype H120 vaccine against QX-like strains. Avian pathology: journal of the W.V.P.A 40(1): 43-54

Sepehri, S.; Kotlowski, R.; Bernstein, C.N.; Krause, D.O. 2009: Phylogenetic analysis of inflammatory bowel disease associated Escherichia coli and the fimH virulence determinant. Inflammatory Bowel Diseases 15(11): 1737-1745

Abolnik, C.; Gerdes, G.H.; Sinclair, M.; Ganzevoort, B.W.; Kitching, J.P.; Burger, C.E.; Romito, M.; Dreyer, M.; Swanepoel, S.; Cumming, G.S.; Olivier, A.J. 2010: Phylogenetic analysis of influenza a viruses (H6N8, H1N8, H4N2, H9N2, H10N7) isolated from wild birds, ducks, and ostriches in South Africa from 2007 to 2009. Avian Diseases 54(1 Suppl): 313-322

Kchouk, F.H.; Gorgi, Y.; Bouslama, L.; Sfar, I.; Ayari, R.; Khiri, H.; Halfon, P.; Aouadi, H.; Jendoubi Ayed, S.; Ayed, K.; Ben Abdallah, T. 2013: Phylogenetic analysis of isolated HCV strains from tunisian hemodialysis patients. Viral Immunology 26(1): 40-48

Gomez-Porras, J.L.; Riaño-Pachón, D.M.; Benito, B.ña.; Haro, R.; Sklodowski, K.; Rodríguez-Navarro, A.; Dreyer, I. 2012: Phylogenetic analysis of k(+) transporters in bryophytes, lycophytes, and flowering plants indicates a specialization of vascular plants. Frontiers in Plant Science 3: 167

Khan, A.A.; Janke, A.; Shimokawa, T.; Zhang, H. 2011: Phylogenetic analysis of kindlins suggests subfunctionalization of an ancestral unduplicated kindlin into three paralogs in vertebrates. Evolutionary Bioinformatics Online 7: 7-19

Zhou, L-Wei.; Wei, Y-Lian.; Dai, Y-Cheng. 2014: Phylogenetic analysis of ligninolytic peroxidases: preliminary insights into the alternation of white-rot and brown-rot fungi in their lineage. Mycology 5(1): 29-42

Mizutani, S.; Tanaka, M.; Wheelock, C.E.; Kanehisa, M.; Goto, S. 2010: Phylogenetic analysis of lipid mediator GPCRs. Genome Informatics. International Conference on Genome Informatics 24: 116-126

Schreeg, L.A.; Kress, W.John.; Erickson, D.L.; Swenson, N.G. 2010: Phylogenetic analysis of local-scale tree soil associations in a lowland moist tropical forest. Plos one 5(10): E13685

Dugan, V.G.; Dunham, E.J.; Jin, G.; Sheng, Z-Mei.; Kaser, E.; Nolting, J.M.; Alexander, H.Lloyd.; Slemons, R.D.; Taubenberger, J.K. 2011: Phylogenetic analysis of low pathogenicity H5N1 and H7N3 influenza A virus isolates recovered from sentinel, free flying, wild mallards at one study site during 2006. Virology 417(1): 98-105

Dankevitch, L.A. 2011: Phylogenetic analysis of lupine's bacterial wet rot--"Pseudomonas xanthochlora". Mikrobiolohichnyi Zhurnal 73(6): 20-24

Lee, J.Y.; Ji, Z.; Tian, B. 2008: Phylogenetic analysis of mRNA polyadenylation sites reveals a role of transposable elements in evolution of the 3'-end of genes. Nucleic Acids Research 36(17): 5581-5590

Dlugosz, E.M.; Chappell, M.A.; Meek, T.H.; Szafranska, P.A.; Zub, K.; Konarzewski, M.; Jones, J.H.; Bicudo, J.E.P.W.; Nespolo, R.F.; Careau, V.; Garland, T. 2013: Phylogenetic analysis of mammalian maximal oxygen consumption during exercise. Journal of Experimental Biology 216(Part 24): 4712-4721

Maness, H.T.D.; Nollens, H.H.; Jensen, E.D.; Goldstein, T.; LaMere, S.; Childress, A.; Sykes, J.; St Leger, J.; Lacave, G.ér.; Latson, F.E.; Wellehan, J.F.X. 2011: Phylogenetic analysis of marine mammal herpesviruses. Veterinary Microbiology 149(1-2): 23-29

Qiao, J.-T.; Guo, R.-B.; Yuan, X.-Z.; Shi, X.-S.; Xu, X.-H.; Fan, X.-L.; Qiu, Y.-L. 2013: Phylogenetic analysis of methanogenic corn stalk degrading microbial communities. Huan Jing Ke Xue= Huanjing Kexue 34(4): 1531-1539

Mao, S.-Y.; Yang, C.-F.; Zhu, W.-Y. 2011: Phylogenetic analysis of methanogens in the pig feces. Current Microbiology 62(5): 1386-1389

Lin, B.; Monreal, C.M.; Tambong, J.T.; Miguez, C.B.; Carrasco-Medina, L. 2009: Phylogenetic analysis of methanotrophic communities in cover soils of a landfill in Ontario. Canadian Journal of Microbiology 55(9): 1103-1112

McDonald, R.; Schreier, H.J.; Watts, J.E.M. 2012: Phylogenetic analysis of microbial communities in different regions of the gastrointestinal tract in Panaque nigrolineatus, a wood-eating fish. Plos one 7(10): E48018

Venegas, J.; Coñoepan, W.; Pichuantes, S.; Miranda, S.; Jercic, Mía.Isabel.; Gajardo, M.; Sánchez, G. 2009: Phylogenetic analysis of microsatellite markers further supports the two hybridization events hypothesis as the origin of the Trypanosoma cruzi lineages. Parasitology Research 105(1): 191-199

Montiel-Sosa, J.F.; Herrero, M.ía.D.; Munoz, M.d.L.; Aguirre-Campa, L.E.; Pérez-Ramírez, G.; García-Ramírez, R.én.; Ruiz-Pesini, E.; Montoya, J. 2013: Phylogenetic analysis of mitochondrial DNA in a patient with Kearns-Sayre syndrome containing a novel 7629-bp deletion. Mitochondrial Dna 24(4): 420-431

Burger, T.D.; Shao, R.; Barker, S.C. 2014: Phylogenetic analysis of mitochondrial genome sequences indicates that the cattle tick, Rhipicephalus (Boophilus) microplus, contains a cryptic species. Molecular Phylogenetics and Evolution 76: 241-253

Wojtkowska, M.łg.; Jąkalski, M.; Pieńkowska, J.R.; Stobienia, O.; Karachitos, A.; Przytycka, T.M.; Weiner, J.; Kmita, H.; Makałowski, W. 2012: Phylogenetic analysis of mitochondrial outer membrane β-barrel channels. Genome Biology and Evolution 4(2): 110-125

Sloan, D.B.; Oxelman, B.; Rautenberg, A.; Taylor, D.R. 2009: Phylogenetic analysis of mitochondrial substitution rate variation in the angiosperm tribe Sileneae. Bmc Evolutionary Biology 9: 260

Erten, S.; Li, X.; Bebek, G.; Li, J.; Koyutürk, M. 2009: Phylogenetic analysis of modularity in protein interaction networks. Bmc Bioinformatics 10: 333

Ciccozzi, M.; Giufre', M.; Accogli, M.; Lo Presti, A.; Graziani, C.; Cella, E.; Cerquetti, M. 2013: Phylogenetic analysis of multidrug-resistant Escherichia coli clones isolated from humans and poultry. New Microbiologica 36(4): 385-394

Cho, Y.-K.; Kim, J.-E.; Foley, B.T. 2013: Phylogenetic analysis of near full-length HIV type 1 genomic sequences from 21 Korean individuals. Aids Research and Human Retroviruses 29(4): 738-743

Bellec, L.; Grimsley, N.; Moreau, H.é; Desdevises, Y. 2009: Phylogenetic analysis of new Prasinoviruses (Phycodnaviridae) that infect the green unicellular algae Ostreococcus, Bathycoccus and Micromonas. Environmental Microbiology Reports 1(2): 114-123

Yan, X.-Y.; Wang, Y.; Xiong, L.-F.; Jian, J.-C.; Wu, Z.-H. 2014: Phylogenetic analysis of newly isolated grass carp reovirus. Springerplus 3: 190

Jones, C.M.; Stres, B.; Rosenquist, M.; Hallin, S. 2008: Phylogenetic analysis of nitrite, nitric oxide, and nitrous oxide respiratory enzymes reveal a complex evolutionary history for denitrification. Molecular Biology and Evolution 25(9): 1955-1966

Ju, W.; Cao, G.; Rump, L.; Strain, E.; Luo, Y.; Timme, R.; Allard, M.; Zhao, S.; Brown, E.; Meng, J. 2012: Phylogenetic analysis of non-O157 Shiga toxin-producing Escherichia coli strains by whole-genome sequencing. Journal of Clinical Microbiology 50(12): 4123-4127

Freeman, M.M.; Kerin, T.; Hull, J.; Teel, E.; Esona, M.; Parashar, U.; Glass, R.I.; Gentsch, J.R. 2009: Phylogenetic analysis of novel G12 rotaviruses in the United States: a molecular search for the origin of a new strain. Journal of Medical Virology 81(4): 736-746

Taira, K.; Nakamura, M.; Okano, S.; Nidaira, M.; Kudaka, J.; Itokazu, K.; Taira, T.; Itokazu, T.; Chinen, M.; Sunagawa, T.; Kimura, H. 2008: Phylogenetic analysis of nucleoprotein (N) gene of measles viruses prevalent in Okinawa, Japan, during 2003-2007. Japanese journal of infectious diseases 61(3): 248-250

Khan, H.A.; Arif, I.A.; Al Farhan, A.H.; Al Homaidan, A.A. 2008: Phylogenetic analysis of oryx species using partial sequences of mitochondrial rRNA genes. Genetics and Molecular Research: Gmr 7(4): 1150-1155

Goñi, N.; Moratorio, G.; Ramas, V.; Coppola, L.; Chiparelli, H.; Cristina, J. 2011: Phylogenetic analysis of pandemic 2009 influenza A virus circulating in the South American region: genetic relationships and vaccine strain match. Archives of virology 156(1): 87-94

Chan, K.-W.; Yang, C.-H.; Lin, J.-W.; Wang, H.-C.; Lin, F.-Y.; Kuo, S.-T.; Wong, M.-L.; Hsu, W.-L. 2009: Phylogenetic analysis of parapoxviruses and the C-terminal heterogeneity of viral ATPase proteins. Gene 432(1-2): 44-53

Senapin, S.; Phiwsaiya, K.; Laosinchai, P.; Kowasupat, C.; Ruenwongsa, P.; Panijpan, B. 2014: Phylogenetic analysis of parasitic trematodes of the genus Euclinostomum found in Trichopsis and Betta fish. Journal of Parasitology 100(3): 368-371

Carnieli, P.; de Novaes Oliveira, R.; de Oliveira Fahl, W.; de Carvalho Ruthner Batista, H.Beatriz.; Scheffer, K.Corrêa.; Iamamoto, K.; Castilho, J.Galera. 2012: Phylogenetic analysis of partial RNA-polymerase blocks II and III of Rabies virus isolated from the main rabies reservoirs in Brazil. Virus Genes 45(1): 76-83

Chadha, T.; Trindade, A.ão.A. 2013: Phylogenetic analysis of pbp genes in treponemes. Infection Ecology and Epidemiology 3

McCarthy, T.W.; Der, J.P.; Honaas, L.A.; dePamphilis, C.W.; Anderson, C.T. 2014: Phylogenetic analysis of pectin-related gene families in Physcomitrella patens and nine other plant species yields evolutionary insights into cell walls. Bmc Plant Biology 14: 79

Smith, N.D. 2010: Phylogenetic analysis of pelecaniformes (aves) based on osteological data: implications for waterbird phylogeny and fossil calibration studies. Plos one 5(10): E13354

Ferreira-Paim, K.; Ferreira, T.B.; Andrade-Silva, L.; Mora, D.J.; Springer, D.J.; Heitman, J.; Fonseca, F.M.; Matos, D.; Melhem, M.ár.S.C.; Silva-Vergara, M.L.ón. 2014: Phylogenetic analysis of phenotypically characterized Cryptococcus laurentii isolates reveals high frequency of cryptic species. Plos one 9(9): E108633

Srivastava, P.; Trivedi, A.C.; Tiwari, A.; Verma, A.; Pant, A.B. 2010: Phylogenetic analysis of poly and non structural protein in Japanese Encephalitis virus with other related viral families. Annals of Neurosciences 17(2): 74-79

O'Callaghan, J.; Dobson, A.D.W. 2006: Phylogenetic analysis of polyketide synthase genes from Aspergillus ochraceus. Mycotoxin Research 22(2): 125-133

Poon, A.F.Y.; Swenson, L.C.; Dong, W.W.Y.; Deng, W.; Kosakovsky Pond, S.L.; Brumme, Z.L.; Mullins, J.I.; Richman, D.D.; Harrigan, P.R.; Frost, S.D.W. 2010: Phylogenetic analysis of population-based and deep sequencing data to identify coevolving sites in the nef gene of HIV-1. Molecular Biology and Evolution 27(4): 819-832

Li, R.; Qiao, S.; Yang, Y.; Su, Y.; Zhao, P.; Zhou, E.; Zhang, G. 2014: Phylogenetic analysis of porcine epidemic diarrhea virus (PEDV) field strains in central China based on the ORF3 gene and the main neutralization epitopes. Archives of Virology 159(5): 1057-1065

Gao, Y.; Kou, Q.; Ge, X.; Zhou, L.; Guo, X.; Yang, H. 2013: Phylogenetic analysis of porcine epidemic diarrhea virus field strains prevailing recently in China. Archives of Virology 158(3): 711-715

Maestri, R.ég.P.; Kaiano, J.H.L.; Neri, D.L.; Soares, L.d.S.; Guerra, S.d.F.D.S.; Oliveira, D.d.S.; Farias, Y.N.; Gabbay, Y.B.; Leite, J.é P.G.; Linhares, A.d.C.; Mascarenhas, J.D.'A.P. 2012: Phylogenetic analysis of probable non-human genes of group a rotaviruses isolated from children with acute gastroenteritis in Belém, Brazil. Journal of Medical Virology 84(12): 1993-2002

Rokas, A. 2011: Phylogenetic analysis of protein sequence data using the Randomized Axelerated Maximum Likelihood (RAXML) Program. Current Protocols in Molecular Biology Chapter 19: Unit 19.11

Chang, G.; Wang, T. 2011: Phylogenetic analysis of protein sequences based on distribution of length about common sub-string. Protein Journal 30(3): 167-172

Abu-Zaitoon, Y.M. 2014: Phylogenetic analysis of putative genes involved in the tryptophan-dependent pathway of auxin biosynthesis in rice. Applied Biochemistry and Biotechnology 172(5): 2480-2495

Park, A.K.; Kim, H.; Jin, H.J. 2010: Phylogenetic analysis of rRNA methyltransferases, Erm and KsgA, as related to antibiotic resistance. Fems Microbiology Letters 309(2): 151-162

De Benedictis, P.; Sow, A.; Fusaro, A.; Veggiato, C.; Talbi, C.; Kaboré, A.; Dundon, W.G.; Bourhy, H.; Capua, I. 2010: Phylogenetic analysis of rabies viruses from Burkina Faso, 2007. Zoonoses and Public Health 57(7-8): E42-E46

Marston, D.A.; McElhinney, L.M.; Ali, Y.H.; Intisar, K.S.; Ho, S.M.; Freuling, C.; Müller, T.; Fooks, A.R. 2009: Phylogenetic analysis of rabies viruses from Sudan provides evidence of a viral clade with a unique molecular signature. Virus Research 145(2): 244-250

Hatakeyama, K.; Sadamasu, K.; Kai, A. 2011: Phylogenetic analysis of rabies viruses isolated from animals in Tokyo in the 1950s. Kansenshogaku Zasshi. Journal of the Japanese Association for Infectious Diseases 85(3): 238-243

Sarma, D.K.; Mishra, N.; Vilcek, S.; Rajukumar, K.; Behera, S.P.; Nema, R.K.; Dubey, P.; Dubey, S.C. 2011: Phylogenetic analysis of recent classical swine fever virus (CSFV) isolates from Assam, India. Comparative Immunology Microbiology and Infectious Diseases 34(1): 11-15

Paul, S.K.; Kobayashi, N.; Nagashima, S.; Ishino, M.; Watanabe, S.; Alam, M.M.; Ahmed, M.U.; Hossain, M.A.; Naik, T.N. 2008: Phylogenetic analysis of rotaviruses with genotypes G1, G2, G9 and G12 in Bangladesh: evidence for a close relationship between rotaviruses from children and adults. Archives of Virology 153(11): 1999-2012

Wang, Y.-H.; Kobayashi, N.; Zhou, X.; Nagashima, S.; Zhu, Z.-R.; Peng, J.-S.; Liu, M.-Q.; Hu, Q.; Zhou, D.-J.; Watanabe, S.; Ishino, M. 2009: Phylogenetic analysis of rotaviruses with predominant G3 and emerging G9 genotypes from adults and children in Wuhan, China. Journal of Medical Virology 81(2): 382-389

Figueiredo, C.A.; Oliveira, M.I.; Curti, S.P.; Afonso, A.M.S.; Frugi Yu, A.L.; Gualberto, F.; Durigon, E.L. 2012: Phylogenetic analysis of rubella virus strains during an outbreak in São Paulo, 2007-2008. Journal of medical virology 84(10): 1666-1671

Martínez-Torres, A.O.; Mosquera, M.M.; Sanz, J.C.; Ramos, B.; Echevarría, J.E. 2009: Phylogenetic analysis of rubella virus strains from an outbreak in Madrid, Spain, from 2004 to 2005. Journal of Clinical Microbiology 47(1): 158-163

Caidi, H.; Abernathy, E.S.; Benjouad, A.; Smit, S.; Bwogi, J.; Nanyunja, M.; El Aouad, R.; Icenogle, J. 2008: Phylogenetic analysis of rubella viruses found in Morocco, Uganda, Cote d'Ivoire and South Africa from 2001 to 2007. Journal of Clinical Virology: the Official Publication of the Pan American Society for Clinical Virology 42(1): 86-90

Namuwulya, P.; Abernathy, E.; Bukenya, H.; Bwogi, J.; Tushabe, P.; Birungi, M.; Seguya, R.; Kabaliisa, T.; Alibu, V.P.; Kayondo, J.K.; Rivailler, P.; Icenogle, J.; Bakamutumaho, B. 2014: Phylogenetic analysis of rubella viruses identified in Uganda, 2003-2012. Journal of medical virology 86(12): 2107-2113

Tran, D.Nguyen.; Pham, N.Thi.Kim.; Tran, T.Thuy.Trinh.; Khamrin, P.; Thongprachum, A.; Komase, K.; Hayakawa, S.; Mizuguchi, M.; Ushijima, H. 2012: Phylogenetic analysis of rubella viruses in Vietnam during 2009-2010. Journal of medical virology 84(4): 705-710

Vauloup-Fellous, C.; Hübschen, J.M.; Abernathy, E.S.; Icenogle, J.; Gaidot, N.; Dubreuil, P.; Parent-du-Châtelet, I.; Grangeot-Keros, L.; Muller, C.P. 2010: Phylogenetic analysis of rubella viruses involved in congenital rubella infections in France between 1995 and 2009. Journal of Clinical Microbiology 48(7): 2530-2535

Valinotto, L.E.; Viegas, M.; Acevedo, M.ía.E.; Barrero, P.R.; Mistchenko, A.S. 2009: Phylogenetic analysis of rubella viruses isolated in 2008 outbreak in Argentina. Journal of Clinical Virology: the Official Publication of the Pan American Society for Clinical Virology 46(3): 286-289

Gou, H.; Guan, G.; Ma, M.; Liu, A.; Liu, Z.; Xu, Z.; Ren, Q.; Li, Y.; Yang, J.; Chen, Z.; Yin, H.; Luo, J. 2013: Phylogenetic analysis of ruminant Theileria spp. from China based on 28S ribosomal RNA gene. Korean Journal of Parasitology 51(5): 511-517

Zuluaga, C.; Buriticá, P.; Marín, M. 2011: Phylogenetic analysis of rust fungi (Uredinales) from the Colombian Andean region using 28S ribosomal DNA sequences. Revista de Biologia Tropical 59(2): 517-540

Nidaira, M.; Taira, K.; Kato, T.; Arakaki, E.; Kyan, H.; Takara, T.; Okano, S.; Kuba, Y.; Kudaka, J.; Noda, M. 2014: Phylogenetic analysis of sapovirus detected from an outbreak of acute gastroenteritis on Ishigaki Island (Okinawa Prefecture, Japan) in 2012. Japanese Journal of Infectious Diseases 67(2): 141-143

Sukkapan, P.; Jia, Y.; Nuchprayoon, I.; Pérez, J.C. 2011: Phylogenetic analysis of serine proteases from Russell's viper (Daboia russelli siamensis) and Agkistrodon piscivorus leucostoma venom. Toxicon: Official Journal of the International Society on Toxinology 58(2): 168-178

Meerow, A.W.; Noblick, L.; Borrone, J.W.; Couvreur, T.L.P.; Mauro-Herrera, M.; Hahn, W.J.; Kuhn, D.N.; Nakamura, K.; Oleas, N.H.; Schnell, R.J. 2009: Phylogenetic analysis of seven WRKY genes across the palm subtribe Attaleinae (Arecaceae) [corrected] identifies Syagrus as sister group of the coconut. Plos one 4(10): E7353

Torices, R.én.; Anderberg, A.A. 2009: Phylogenetic analysis of sexual systems in Inuleae (Asteraceae). American Journal of Botany 96(5): 1011-1019

Henriques, A.M.; Fagulha, T.; Duarte, M.; Ramos, F.; Barros, S.; Luís, T.; Bernardino, R.; Fevereiro, M. 2010: Phylogenetic analysis of six isolates of beak and feather disease virus from African grey parrots in Portugal. Avian Diseases 54(3): 1066-1071

Vasin, A.; Klotchenko, S.; Puchkova, L. 2013: Phylogenetic analysis of six-domain multi-copper blue proteins. Plos Currents 5

Skurikhina, L.A.; Kukhlevskiĭ, A.D.; Oleĭnik, A.G.; Kovpak, N.E. 2010: Phylogenetic analysis of smelts (Osmeridae) based on the variation of cytochrome b gene. Genetika 46(1): 79-91

Xia, Y.-g.; Li, Y.-t.; Lu, Y.-h.; Ren, H.; Hu, A.-q.; Zhu, J.-f.; Wang, X.-c.; Jing, Q.-w.; Zheng, Y.-j. 2009: Phylogenetic analysis of sporadic hepatitis e virus in Eastern China. Zhonghua Liu Xing Bing Xue Za Zhi 30(12): 1269-1272

Basic, A.; Schachner, O.; Bilic, I.; Hess, M. 2009: Phylogenetic analysis of spring viraemia of carp virus isolates from Austria indicates the existence of at least two subgroups within genogroup Id. Diseases of Aquatic Organisms 85(1): 31-40

Billinis, C.; Mavrogianni, V.S.; Spyrou, V.; Fthenakis, G.C. 2012: Phylogenetic analysis of strains of Orf virus isolated from two outbreaks of the disease in sheep in Greece. Virology Journal 9: 24

Coutinho, T.J.D.; Rodrigues, N.F.; Farias, S.T. 2013: Phylogenetic analysis of substrate-binding subunits in an osmoprotectant system. Genetics and Molecular Research: Gmr 12(4): 5743-5757

Danishuddin, M.; Khan, S.N.; Khan, A.U. 2009: Phylogenetic analysis of surface proteins of novel H1N1 virus isolated from 2009 pandemic. Bioinformation 4(3): 94-97

Sarangi, A.N.; Srivastava, S. 2011: Phylogenetic analysis of swine and human hepatitis e virus. Indian Journal of Medical Research 133: 548-549

Kowalczyk, A.; Markowska-Daniel, I. 2010: Phylogenetic analysis of swine influenza viruses isolated in Poland. Polish Journal of Veterinary Sciences 13(1): 37-44

Shi, Y.; Zhang, Y.; Yang, H. 2009: Phylogenetic analysis of symbiotic archaea in the gut of Reticulitermes chinensis Snyder. Wei Sheng Wu Xue Bao 49(12): 1655-1659

Baĭmiev, A.K.; Ivanova, E.S.; Ptitsyn, K.G.; Chubukova, O.V.; Baĭmiev, A.K. 2011: Phylogenetic analysis of symbiotic genes of nodule bacteria in the plants of the genus Lathyrus (L.) (Fabaceae). Molekuliarnaia Genetika Mikrobiologiia i Virusologiia 4: 14-17

Sato, M.; Nishizawa, I.; Fujihara, M.; Nishimura, T.; Matsubara, K.; Harasawa, R.ô 2009: Phylogenetic analysis of the 16S rRNA gene of Anaplasma species detected from Japanese serows (Capricornis crispus). Journal of Veterinary Medical Science 71(12): 1677-1679

Lee, Y.-M.; Kim, D.-M.; Lee, S.-H.; Jang, M.-S.; Neupane, G.P. 2011: Phylogenetic analysis of the 56 kDa protein genes of Orientia tsutsugamushi in Southwest Area of Korea. American Journal of Tropical Medicine and Hygiene 84(2): 250-254

Jeong, H.W.; Choi, Y.K.; Baek, Y.H.; Seong, M.H. 2012: Phylogenetic analysis of the 56-kDa type-specific protein genes of Orientia tsutsugamushi in Central Korea. Journal of Korean Medical Science 27(11): 1315-1319

Gilbert, C.C. 2011: Phylogenetic analysis of the African papionin basicranium using 3-D geometric morphometrics: the need for improved methods to account for allometric effects. American Journal of Physical Anthropology 144(1): 60-71

Liu, M.; Kang, C.; Yan, C.; Huang, T.; Song, X.; Zhang, X.; Yue, B.; Zeng, T. 2016: Phylogenetic analysis of the Black Stork Ciconia nigra (Ciconiiformes: Ciconiidae) based on complete mitochondrial genome. Mitochondrial Dna. Part a Dna Mapping Sequencing and Analysis 27(1): 261-262

Chiary, H.R.; Chaudhary, A.; Singh, H.S. 2013: Phylogenetic analysis of the Dactylogyroides longicirrus (Monogenea: Dactylogyridae) based on the 18S and ITS 1 ribosomal genes. Bioinformation 9(5): 250-254

Luo, T.R.; Liao, S.-H.; Wu, X.-S.; Feng, L.; Yuan, Z.-X.; Li, H.; Liang, J.-J.; Meng, X.-M.; Zhang, H.-Y. 2011: Phylogenetic analysis of the E2 gene of classical swine fever virus from the Guangxi Province of southern China. Virus Genes 42(3): 347-354

Azevedo-Júnior, G.M.d.; Guimarães-Marques, G.M.; Cegatti Bridi, L.; Christine Ohse, K.; Vicentini, R.; Tadei, W.; Rafael, M.ír.S. 2014: Phylogenetic analysis of the GST family in Anopheles (Nyssorhynchus) darlingi. Acta Tropica 136: 27-31

Msiska, Z.; Morton, J.B. 2009: Phylogenetic analysis of the Glomeromycota by partial beta-tubulin gene sequences. Mycorrhiza 19(4): 247-254

Shen, Z.; Collatos, A.R.; Bibeau, J.P.; Furt, F.; Vidali, L. 2012: Phylogenetic analysis of the Kinesin superfamily from physcomitrella. Frontiers in Plant Science 3: 230

Balode, D.; Skar, H.; Mild, M.; Kolupajeva, T.; Ferdats, A.; Rozentale, B.; Leitner, T.; Albert, J. 2012: Phylogenetic analysis of the Latvian HIV-1 epidemic. Aids Research and Human Retroviruses 28(8): 928-932

Soni, D.K.; Dubey, S.K. 2014: Phylogenetic analysis of the Listeria monocytogenes based on sequencing of 16S rRNA and hlyA genes. Molecular Biology Reports 41(12): 8219-8229

Zuccolo, J.; Bau, J.; Childs, S.J.; Goss, G.G.; Sensen, C.W.; Deans, J.P. 2010: Phylogenetic analysis of the MS4A and TMEM176 gene families. Plos one 5(2): E9369

Huang, J.; Yang, B.; Yan, C.; Yang, C.; Tu, F.; Zhang, X.; Yue, B. 2014: Phylogenetic analysis of the Mustela altaica (Carnivora: Mustelidae) based on complete mitochondrial genome. Mitochondrial Dna 25(4): 255-256

Muthusamy, N.; Ahmed, S.A.; Rana, B.K.; Navarre, S.; Kozlowski, D.J.; Liberles, D.A.; Bergson, C. 2009: Phylogenetic analysis of the NEEP21/calcyon/P19 family of endocytic proteins: evidence for functional evolution in the vertebrate CNS. Journal of Molecular Evolution 69(4): 319-332

Parker, J.D.K.; Bradley, B.A.; Mooers, A.O.; Quarmby, L.M. 2007: Phylogenetic analysis of the Neks reveals early diversification of ciliary-cell cycle kinases. Plos one 2(10): E1076

Blanchard, P.; Schurr, F.; Olivier, V.; Celle, O.; Antùnez, K.; Bakonyi, T.às.; Berthoud, H.él.èn.; Haubruge, E.; Higes, M.; Kasprzak, S.; Koeglberger, H.; Kryger, P.; Thiéry, R.; Ribière, M. 2009: Phylogenetic analysis of the RNA-dependent RNA polymerase (RdRp) and a predicted structural protein (pSP) of the Chronic bee paralysis virus (CBPV) isolated from various geographic regions. Virus Research 144(1-2): 334-338

Luo, H.; Qin, J.; Chen, F.; Xie, Q.; Bi, Y.; Cao, Y.; Xue, C. 2012: Phylogenetic analysis of the S1 glycoprotein gene of infectious bronchitis viruses isolated in China during 2009-2010. Virus genes 44(1): 19-23

Jørgensen, A.; Alfjorden, A.; Henriksen, K.; Sterud, E. 2007: Phylogenetic analysis of the SSU rRNA gene from the piscine diplomonad Spironucleus torosus (Diplomonadida: Hexamitinae). Folia Parasitologica 54(4): 277-282

Yin, Y.-x.; Ou, Z.-y.; Xu, Y.; Zhou, R.; Xia, H.-m. 2014: Phylogenetic analysis of the VP1 gene of Enterovirus 71 in Guangzhou during the high occurrence period of 2008. Virus Genes 48(3): 538-542

Sang, Y.; Ma, J.; Hou, Z.; Zhang, Y. 2012: Phylogenetic analysis of the VP2 gene of Aleutian mink disease parvoviruses isolated from 2009 to 2011 in China. Virus Genes 45(1): 31-37

Zhang, R.; Yang, S.; Zhang, W.; Zhang, T.; Xie, Z.; Feng, H.; Wang, S.; Xia, X. 2010: Phylogenetic analysis of the VP2 gene of canine parvoviruses circulating in China. Virus Genes 40(3): 397-402

Piterina, A.V.; Bartlett, J.; Pembroke, J.T. 2012: Phylogenetic analysis of the bacterial community in a full scale autothermal thermophilic aerobic digester (ATAD) treating mixed domestic wastewater sludge for land spread. Water Research 46(8): 2488-2504

van de Sande, W.W.J. 2012: Phylogenetic analysis of the complete mitochondrial genome of Madurella mycetomatis confirms its taxonomic position within the order Sordariales. Plos one 7(6): E38654

Gao, Z.; Wang, M.; Blair, D.; Zheng, Y.; Dou, Y. 2014: Phylogenetic analysis of the endoribonuclease Dicer family. Plos one 9(4): E95350

Pavlopoulou, A.; Kossida, S. 2009: Phylogenetic analysis of the eukaryotic RNA (cytosine-5)-methyltransferases. Genomics 93(4): 350-357

Holden, C.; Mace, R.; Holden, C.; Mace, R. 2009: Phylogenetic analysis of the evolution of lactose digestion in adults. 1997. Human Biology 81(5-6): 597-619

Bo, X.; Zun-xi, H.; Xiao-yan, W.; Run-chi, G.; Xiang-hua, T.; Yue-lin, M.; Yun-Juan, Y.; Hui, S.; Li-da, Z. 2010: Phylogenetic analysis of the fecal flora of the wild pygmy loris. American Journal of Primatology 72(8): 699-706

Giammanco, G.M.; Grimont, P.A.D.; Grimont, F.; Lefevre, M.; Giammanco, G.; Pignato, S. 2011: Phylogenetic analysis of the genera Proteus, Morganella and Providencia by comparison of rpoB gene sequences of type and clinical strains suggests the reclassification of Proteus myxofaciens in a new genus, Cosenzaea gen. nov., as Cosenzaea myxofaciens comb. nov. International Journal of Systematic and Evolutionary Microbiology 61(Part 7): 1638-1644

Izmalkova, T.Y.; Sazonova, O.I.; Kosheleva, I.A.; Boronin, A.M. 2013: Phylogenetic analysis of the genes for naphthalene and phenanthrene degradation in Burkholderia sp. strains. Genetika 49(6): 703-711

Zhou, Z.; Nie, K.; Tang, C.; Wang, Z.; Zhou, R.; Hu, S.; Zhang, Z. 2010: Phylogenetic analysis of the genus Anaplasma in Southwestern China based on 16S rRNA sequence. Research in Veterinary Science 89(2): 262-265

Yan, H.-H.; Baum, B.R.; Zhou, P.-P.; Zhao, J.; Wei, Y.-M.; Ren, C.-Z.; Xiong, F.-Q.; Liu, G.; Zhong, L.; Zhao, G.; Peng, Y.-Y. 2014: Phylogenetic analysis of the genus Avena based on chloroplast intergenic spacer psbA-trnH and single-copy nuclear gene Acc1. Genome 57(5): 267-277

Kirby, B.M.; Everest, G.J.; Meyers, P.R. 2010: Phylogenetic analysis of the genus Kribbella based on the gyrB gene: proposal of a gyrB-sequence threshold for species delineation in the genus Kribbella. Antonie van Leeuwenhoek 97(2): 131-142

Smith, M.E.; Gryganskyi, A.; Bonito, G.; Nouhra, E.; Moreno-Arroyo, B.; Benny, G. 2013: Phylogenetic analysis of the genus Modicella reveals an independent evolutionary origin of sporocarp-forming fungi in the Mortierellales. Fungal Genetics and Biology: Fg and B 61: 61-68

Woma, T.Y.; van Vuuren, M.; Bosman, A.-M.; Quan, M.; Oosthuizen, M. 2010: Phylogenetic analysis of the haemagglutinin gene of current wild-type canine distemper viruses from South Africa: lineage Africa. Veterinary Microbiology 143(2-4): 126-132

Metreveli, G.; Zohari, S.; Ejdersund, A.; Berg, M. 2010: Phylogenetic analysis of the hemagglutinin gene of low pathogenic avian influenza virus H7N7 strains in mallards in Northern Europe. Avian Diseases 54(1 Suppl): 453-456

Moosakhani, F.; Shoshtari, A.H.; Pourbakhsh, S.A.; Keyvanfar, H.; Ghorbani, A. 2010: Phylogenetic analysis of the hemagglutinin genes of 12 H9N2 influenza viruses isolated from chickens in Iran from 2003 to 2005. Avian Diseases 54(2): 870-874

Piubeli, F.; Grossman, M.J.; Fantinatti-Garboggini, F.; Durrant, L.R. 2014: Phylogenetic analysis of the microbial community in hypersaline petroleum produced water from the Campos Basin. Environmental Science and Pollution Research International 21(20): 12006-12016

Burger, T.D.; Shao, R.; Barker, S.C. 2013: Phylogenetic analysis of the mitochondrial genomes and nuclear rRNA genes of ticks reveals a deep phylogenetic structure within the genus Haemaphysalis and further elucidates the polyphyly of the genus Amblyomma with respect to Amblyomma sphenodonti and Amblyomma elaphense. Ticks and Tick-Borne Diseases 4(4): 265-274

Danishuddin, M.; Khan, A.U. 2009: Phylogenetic analysis of the neuraminidase gene reveals that the H5N1 strains prevalent in chickens during 2006 bird flu outbreaks in two regions of Maharashtra, India are genetically different. Genomics Proteomics and Bioinformatics 7(1-2): 57-61

Qiu, B.-F.; Liu, W.-J.; Tang, Y.-H.; Peng, D.-X.; Liu, X.-F. 2009: Phylogenetic analysis of the neuraminidase genes of subtype N1 viruses in domestic ducks in eastern China. Bing du Xue Bao 25(2): 131-136

Zohari, S.; Gyarmati, P.ét.; Ejdersund, A.; Berglöf, U.; Thorén, P.; Ehrenberg, M.; Czifra, G.ör.; Belák, S.án.; Waldenström, J.; Olsen, B.ör.; Berg, M. 2008: Phylogenetic analysis of the non-structural (NS) gene of influenza a viruses isolated from mallards in Northern Europe in 2005. Virology Journal 5: 147

Bogoyavlenskiy, A.; Berezin, V.; Prilipov, A.; Korotetskiy, I.; Zaitseva, I.; Kydyrmanov, A.; Karamedin, K.; Ishmukhametova, N.; Asanova, S.; Sayatov, M.; Zhumatov, K. 2011: Phylogenetic analysis of the non-structural (NS) gene of influenza A viruses isolated in Kazakhstan in 2002-2009. Virologica Sinica 26(6): 376-385

Harada, S.; Tokuoka, E.; Kiyota, N.; Katayama, K.; Oka, T. 2013: Phylogenetic analysis of the nonstructural and structural protein encoding region sequences, indicating successive appearance of genomically diverse sapovirus strains from gastroenteritis patients. Japanese Journal of Infectious Diseases 66(5): 454-457

Li, H.; Spencer, S.D.; Lian, L.; Zhang, Z.; Lu, P. 2012: Phylogenetic analysis of the nucleoprotein gene of measles viruses prevalent in Nantong, Jiangsu Province, China, during 2010. Epidemiology and Infection 140(9): 1607-1611

Mahmood, S.; Alexander, D.J.; Slomka, M.J.; Manvell, R.J.; Hanna, A.; Fuller, C.M.; Brown, I.H. 2010: Phylogenetic analysis of the nucleotide sequences for the HN gene of 22 avian paramyxovirus type 2 viruses reveals marked heterogeneity. Avian Pathology: Journal of the W.V.P.A 39(6): 453-458

Lavrent'ev, M.V.; Prilipov, A.G.; L'vov, S.D.; L'vov, D.K. 2008: Phylogenetic analysis of the nucleotide sequences of Chatanga virus strains, the new representative of California encephalitis serocomplex, isolated in different regions of the Russian Federation. Voprosy Virusologii 53(6): 25-29

Karimian, F.; Oshaghi, M.Ali.; Sedaghat, M.Mahdi.; Waterhouse, R.M.; Vatandoost, H.; Hanafi-Bojd, A.Ali.; Ravasan, N.Maleki.; Chavshin, A.Reza. 2014: Phylogenetic analysis of the oriental-Palearctic-Afrotropical members of Anopheles (Culicidae: Diptera) based on nuclear rDNA and mitochondrial DNA characteristics. Japanese Journal of Infectious Diseases 67(5): 361-367

Pintus, S.S.; Fomin, E.S.; Oshurkov, I.S.; Ivanisenko, V.A. 2007: Phylogenetic analysis of the p53 and p63/p73 gene families. In Silico Biology 7(3): 319-332

Vukea, P.R.; Willows-Munro, S.; Horner, R.F.; Coetzer, T.H.T. 2014: Phylogenetic analysis of the polyprotein coding region of an infectious South African bursal disease virus (IBDV) strain. Infection Genetics and Evolution: Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases 21: 279-286

Iurlova, A.A.; Makunin, I.V.; Zhimulev, I.F. 2010: Phylogenetic analysis of the rapidly evolving SuUR gene in insects. Genetika 46(9): 1272-1275

Liang, Z.; Kumar, A.S.M.; Jones, M.S.; Knowles, N.J.; Lipton, H.L. 2008: Phylogenetic analysis of the species Theilovirus: emerging murine and human pathogens. Journal of Virology 82(23): 11545-11554

Matsuda, T.; Morishita, M.; Hinomoto, N.; Gotoh, T. 2014: Phylogenetic analysis of the spider mite sub-family Tetranychinae (Acari: Tetranychidae) based on the mitochondrial COi gene and the 18S and the 5' end of the 28S rRNA genes indicates that several genera are polyphyletic. Plos one 9(10): E108672

Babakir-Mina, M.; Ciccozzi, M.; Ciotti, M.; Marcuccilli, F.; Balestra, E.; Dimonte, S.; Perno, C.F.; Aquaro, S. 2009: Phylogenetic analysis of the surface proteins of influenza a (H5N1) viruses isolated in Asian and African populations. New Microbiologica 32(4): 397-403

Carulei, O.; Douglass, N.; Williamson, A.-L. 2009: Phylogenetic analysis of three genes of Penguinpox virus corresponding to Vaccinia virus G8R (VLTF-1), A3L (P4b) and H3L reveals that it is most closely related to Turkeypox virus, Ostrichpox virus and Pigeonpox virus. Virology Journal 6: 52

Kenar Koohi, A.; Ravanshad, M.; Rasouli, M.; Falahi, S.; Baghban, A. 2012: Phylogenetic analysis of torque teno virus in hepatitis C virus infected patients in shiraz. Hepatitis Monthly 12(7): 437-441

Yu, X.; Yu, H.; Kong, L.; Li, Q. 2014: Phylogenetic analysis of tyrosinase gene family in the Pacific oyster (Crassostrea gigas Thunberg). Yi Chuan 36(2): 135-144

Shaik, A.P.; Alsaeed, A.H.; Sultana, A. 2012: Phylogenetic analysis of uroporphyrinogen IIi synthase (UROS) gene. Bioinformation 8(25): 1265-1270

Simmon, K.E.; Hall, L.; Woods, C.W.; Marco, F.; Miro, J.M.; Cabell, C.; Hoen, B.; Marin, M.; Utili, R.; Giannitsioti, E.; Doco-Lecompte, T.; Bradley, S.; Mirrett, S.; Tambic, A.; Ryan, S.; Gordon, D.; Jones, P.; Korman, T.; Wray, D.; Reller, L.B.; Tripodi, M.-F.; Plesiat, P.; Morris, A.J.; Lang, S.; Murdoch, D.R.; Petti, C.A. 2008: Phylogenetic analysis of viridans group streptococci causing endocarditis. Journal of Clinical Microbiology 46(9): 3087-3090

Wang, Y.; Chen, K.; Yao, Q.; Zheng, X.; Yang, Z. 2009: Phylogenetic analysis of zebrafish basic helix-loop-helix transcription factors. Journal of Molecular Evolution 68(6): 629-640

Correa, P.G.; Oguiura, N. 2013: Phylogenetic analysis of β-defensin-like genes of Bothrops, Crotalus and Lachesis snakes. Toxicon: Official Journal of the International Society on Toxinology 69: 65-74

Weng, X.-b.; Mi, Z.-h. 2011: Phylogenetic analysis on pandrug-resistant Acinetobacter baumannii strains. Zhonghua Liu Xing Bing Xue Za Zhi 32(9): 948-949

Zhou, J.; Huang, Y.; Mo, M. 2009: Phylogenetic analysis on the soil bacteria distributed in karst forest. Brazilian Journal of Microbiology: 40(4): 827-837

Lai, A.; Bozzi, G.; Franzetti, M.; Binda, F.; Simonetti, F.R.; Micheli, V.; Meraviglia, P.; Corsi, P.; Bagnarelli, P.; De Luca, A.; Ciccozzi, M.; Zehender, G.; Zazzi, M.; Balotta, C. 2014: Phylogenetic analysis provides evidence of interactions between Italian heterosexual and South American homosexual males as the main source of national HIV-1 subtype C epidemics. Journal of medical virology 86(5): 729-736

Hu, Q.; Yan, C.; Sun, G. 2013: Phylogenetic analysis revealed reticulate evolution of allotetraploid Elymus ciliaris. Molecular Phylogenetics and Evolution 69(3): 805-813

Brown, E.M.; McTaggart, L.R.; Zhang, S.X.; Low, D.E.; Stevens, D.A.; Richardson, S.E. 2013: Phylogenetic analysis reveals a cryptic species Blastomyces gilchristii, sp. nov. within the human pathogenic fungus Blastomyces dermatitidis. Plos one 8(3): E59237

Rodrigues, A.M.; de Melo Teixeira, M.; de Hoog, G.S.; Schubach, T.ân.M.P.; Pereira, S.A.; Fernandes, G.F.; Bezerra, L.M.L.; Felipe, M.S.; de Camargo, Z.P. 2013: Phylogenetic analysis reveals a high prevalence of Sporothrix brasiliensis in feline sporotrichosis outbreaks. Plos Neglected Tropical Diseases 7(6): E2281

Quintana-Hayashi, M.P.; Thakur, S. 2012: Phylogenetic analysis reveals common antimicrobial resistant Campylobacter coli population in antimicrobial-free (ABF) and commercial swine systems. Plos one 7(9): E44662

Barik, S.; SarkarDas, S.; Singh, A.; Gautam, V.; Kumar, P.; Majee, M.; Sarkar, A.K. 2014: Phylogenetic analysis reveals conservation and diversification of micro RNA166 genes among diverse plant species. Genomics 103(1): 114-121

Gallie, D.R.; Liu, R. 2014: Phylogenetic analysis reveals dynamic evolution of the poly(A)-binding protein gene family in plants. Bmc Evolutionary Biology 14: 238

Hernandez-Salmeron, J.E.; Santoyo, G. 2011: Phylogenetic analysis reveals gene conversions in multigene families of rhizobia. Genetics and Molecular Research: Gmr 10(3): 1383-1392

Jewell, M.; Frère, C.H.; Harris-Shultz, K.; Anderson, W.F.; Godwin, I.D.; Lambrides, C.J. 2012: Phylogenetic analysis reveals multiple introductions of Cynodon species in Australia. Molecular Phylogenetics and Evolution 65(2): 390-396

Pagán, I.; Firth, C.; Holmes, E.C. 2010: Phylogenetic analysis reveals rapid evolutionary dynamics in the plant RNA virus genus tobamovirus. Journal of Molecular Evolution 71(4): 298-307

Capyk, J.K.; Eltis, L.D. 2012: Phylogenetic analysis reveals the surprising diversity of an oxygenase class. Journal of Biological Inorganic Chemistry: Jbic: a Publication of the Society of Biological Inorganic Chemistry 17(3): 425-436

García Rivero, D.; O'Brien, M.J. 2014: Phylogenetic analysis shows that Neolithic slate plaques from the southwestern Iberian Peninsula are not genealogical recording systems. Plos one 9(2): E88296

Steinrigl, A.; Ertl, R.; Langbein, I.; Klein, D. 2010: Phylogenetic analysis suggests independent introduction of feline immunodeficiency virus clades a and B to Central Europe and identifies diverse variants of clade B. Veterinary Immunology and Immunopathology 134(1-2): 82-89

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Landis, M.J.; Schraiber, J.G.; Liang, M. 2013: Phylogenetic analysis using Lévy processes: finding jumps in the evolution of continuous traits. Systematic Biology 62(2): 193-204

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Matasci, N.; McKay, S. 2013: Phylogenetic analysis with the iPlant discovery environment. Current Protocols in Bioinformatics Chapter 6: Unit 6.13

Tiwari, S.K.; Sharma, V.; Sharma, V.K.; Gopi, M.; Saikant, R.; Nandan, A.; Bardia, A.; Gunisetty, S.; Katikala, P.; Habeeb, M.A.; Khan, A.A.; Habibullah, C.M. 2011: Phylogenetic analysis, based on EPIYA repeats in the cagA gene of Indian Helicobacter pylori, and the implications of sequence variation in tyrosine phosphorylation motifs on determining the clinical outcome. Genetics and Molecular Biology 34(2): 280-285

Sekhar Pagadala, N.; Arha, M.; Reddy, P.S.; Kumar, R.; Sirisha, V.L.; Prashant, S.; Janardhan Reddy, K.; Khan, B.; Rawal, S.K.; Kavi Kishor, P.B. 2009: Phylogenetic analysis, homology modelling, molecular dynamics and docking studies of caffeoyl-CoA-O- methyl transferase (CCoAOMT 1 and 2) isoforms isolated from subabul (Leucaena leucocephala). Journal of Molecular Modeling 15(2): 203-221

Li, W.; Liu, B.; Yu, L.; Feng, D.; Wang, H.; Wang, J. 2009: Phylogenetic analysis, structural evolution and functional divergence of the 12-oxo-phytodienoate acid reductase gene family in plants. Bmc Evolutionary Biology 9: 90

Alinsug, M.V.; Yu, C.-W.; Wu, K. 2009: Phylogenetic analysis, subcellular localization, and expression patterns of RPD3/HDA1 family histone deacetylases in plants. Bmc Plant Biology 9: 37

Huma, T.; Maryam, A.; Rehman, S.U.; Qamar, M.T.U.; Shaheen, T.; Haque, A.; Shaheen, B. 2014: Phylogenetic and Comparative Sequence Analysis of Thermostable Alpha Amylases of kingdom Archea, Prokaryotes and Eukaryotes. Bioinformation 10(7): 443-448

Inskeep, W.P.; Jay, Z.J.; Herrgard, M.J.; Kozubal, M.A.; Rusch, D.B.; Tringe, S.G.; Macur, R.E.; Jennings, R.d.; Boyd, E.S.; Spear, J.R.; Roberto, F.F. 2013: Phylogenetic and Functional Analysis of Metagenome Sequence from High-Temperature Archaeal Habitats Demonstrate Linkages between Metabolic Potential and Geochemistry. Frontiers in Microbiology 4: 95

Nishida, H.; Yun, C.-S. 2010: Phylogenetic and Guanine-Cytosine Content Analysis of Symbiobacterium thermophilum Genes. International Journal of Evolutionary Biology 2011: 634505

Futamata, H.; Kaiya, S.; Sugawara, M.; Hiraishi, A. 2009: Phylogenetic and Transcriptional Analyses of a Tetrachloroethene-Dechlorinating "Dehalococcoides" Enrichment Culture TUT2264 and its Reductive-Dehalogenase Genes. Microbes and Environments 24(4): 330-337

Zhu, Y.; Hu, S.; Bai, T.; Yang, L.; Zhao, X.; Zhu, W.; Huang, Y.; Deng, Z.; Zhang, H.; Bai, Z.; Yu, M.; Huang, J.; Shu, Y. 2014: Phylogenetic and antigenic characterization of reassortant H9N2 avian influenza viruses isolated from wild waterfowl in the East Dongting Lake wetland in 2011-2012. Virology journal 11: 77

Safary, A.; Moniri, R.; Mirhashemi, S.M.; Nikzad, H.; Khiavi, M.A. 2013: Phylogenetic and biochemical characterization of a new halo-thermotolerant, biofilm-forming Bacillus from Saline Lake of Iran. Polish Journal of Microbiology 62(4): 419-425

Colleoni, C.; Linka, M.; Deschamps, P.; Handford, M.G.; Dupree, P.; Weber, A.P.M.; Ball, S.G. 2010: Phylogenetic and biochemical evidence supports the recruitment of an ADP-glucose translocator for the export of photosynthate during plastid endosymbiosis. Molecular Biology and Evolution 27(12): 2691-2701

Zhou, Z.; Hong, D.; Niu, Y.; Li, G.; Nie, Z.; Wen, J.; Sun, H. 2013: Phylogenetic and biogeographic analyses of the Sino-Himalayan endemic genus Cyananthus (Campanulaceae) and implications for the evolution of its sexual system. Molecular Phylogenetics and Evolution 68(3): 482-497

Ghikas, D.V.; Kouvelis, V.N.; Typas, M.A. 2010: Phylogenetic and biogeographic implications inferred by mitochondrial intergenic region analyses and ITS1-5.8S-ITS2 of the entomopathogenic fungi Beauveria bassiana and B. brongniartii. Bmc Microbiology 10: 174

Fushiki, D.; Hamada, Y.; Yoshimura, R.; Endo, Y. 2010: Phylogenetic and bioinformatic analysis of gap junction-related proteins, innexins, pannexins and connexins. Biomedical Research 31(2): 133-142

Khan, T.A.; Rue, C.A.; Rehmani, S.F.; Ahmed, A.; Wasilenko, J.L.; Miller, P.J.; Afonso, C.L. 2010: Phylogenetic and biological characterization of Newcastle disease virus isolates from Pakistan. Journal of Clinical Microbiology 48(5): 1892-1894

Yuan, J.; Zhu, Q.; Liu, B. 2014: Phylogenetic and biological significance of evolutionary elements from metazoan mitochondrial genomes. Plos one 9(1): E84330

Menkis, A.; Bastiaans, E.; Jacobson, D.J.; Johannesson, H. 2009: Phylogenetic and biological species diversity within the Neurospora tetrasperma complex. Journal of Evolutionary Biology 22(9): 1923-1936

Wichmann, O.; Schimanski, S.; Koch, J.; Kohler, M.; Rothe, C.; Plentz, A.; Jilg, W.; Stark, K. 2008: Phylogenetic and case-control study on hepatitis e virus infection in Germany. Journal of Infectious Diseases 198(12): 1732-1741

Gallagher, K.A.; Rauscher, K.; Pavan Ioca, L.; Jensen, P.R. 2013: Phylogenetic and chemical diversity of a hybrid-isoprenoid-producing streptomycete lineage. Applied and Environmental Microbiology 79(22): 6894-6902

Sharp, K.; Arthur, K.E.; Gu, L.; Ross, C.; Harrison, G.; Gunasekera, S.P.; Meickle, T.; Matthew, S.; Luesch, H.; Thacker, R.W.; Sherman, D.H.; Paul, V.J. 2009: Phylogenetic and chemical diversity of three chemotypes of bloom-forming lyngbya species (Cyanobacteria: Oscillatoriales) from reefs of southeastern Florida. Applied and Environmental Microbiology 75(9): 2879-2888

Sundström, G.ör.; Larsson, T.A.; Larhammar, D. 2008: Phylogenetic and chromosomal analyses of multiple gene families syntenic with vertebrate Hox clusters. Bmc Evolutionary Biology 8: 254

Branquinho, R.; Meirinhos-Soares, Lís.; Carriço, Jão.A.; Pintado, M.; Peixe, Lísa.V. 2014: Phylogenetic and clonality analysis of Bacillus pumilus isolates uncovered a highly heterogeneous population of different closely related species and clones. Fems Microbiology Ecology 90(3): 689-698

Mizuta, K.; Hirata, A.; Suto, A.; Aoki, Y.; Ahiko, T.; Itagaki, T.; Tsukagoshi, H.; Morita, Y.; Obuchi, M.; Akiyama, M.; Okabe, N.; Noda, M.; Tashiro, M.; Kimura, H. 2010: Phylogenetic and cluster analysis of human rhinovirus species a (HRV-A) isolated from children with acute respiratory infections in Yamagata, Japan. Virus Research 147(2): 265-274

Bay, D.C.; Hafez, M.; Young, M.J.; Court, D.A. 2012: Phylogenetic and coevolutionary analysis of the β-barrel protein family comprised of mitochondrial porin (VDAC) and Tom40. Biochimica et Biophysica Acta 1818(6): 1502-1519

Sipiczki, M.; Balazs, A.; Monus, A.; Papp, L.; Horvath, A.; Sveiczer, A.; Miklos, I. 2014: Phylogenetic and comparative functional analysis of the cell-separation α-glucanase Agn1p in Schizosaccharomyces. Microbiology 160(Part 6): 1063-1074

Szczepankowska, A.K.; Prestel, E.; Mariadassou, M.; Bardowski, J.K.; Bidnenko, E. 2011: Phylogenetic and complementation analysis of a single-stranded DNA binding protein family from lactococcal phages indicates a non-bacterial origin. Plos one 6(11): E26942

Dong, C.; Chen, L.; Liao, Y.; Shao, Z. 2011: Phylogenetic and degrading genes analysis of a PAH-degrading bacterium TVG9-VIi from deep-sea hydrythermal environment. Wei Sheng Wu Xue Bao 51(11): 1548-1554

Bray, T.C.; Mohammed, O.B.; Alagaili, A.N. 2013: Phylogenetic and demographic insights into Kuhl's pipistrelle, Pipistrellus kuhlii, in the Middle East. Plos one 8(2): E57306

Chida, A.S.; Goyos, A.; Robert, J. 2011: Phylogenetic and developmental study of CD4, CD8 α and β T cell co-receptor homologs in two amphibian species, Xenopus tropicalis and Xenopus laevis. Developmental and Comparative Immunology 35(3): 366-377

Nakazawa, Y.; Emerson, G.L.; Carroll, D.S.; Zhao, H.; Li, Y.; Reynolds, M.G.; Karem, K.L.; Olson, V.A.; Lash, R.R.; Davidson, W.B.; Smith, S.K.; Levine, R.S.; Regnery, R.L.; Sammons, S.A.; Frace, M.A.; Mutasim, E.M.; Karsani, M.E.M.; Muntasir, M.O.; Babiker, A.A.; Opoka, L.; Chowdhary, V.; Damon, I.K. 2013: Phylogenetic and ecologic perspectives of a monkeypox outbreak, southern Sudan, 2005. Emerging Infectious Diseases 19(2): 237-245

Geml, J.óz.; Laursen, G.A.; Herriott, I.C.; McFarland, J.M.; Booth, M.G.; Lennon, N.; Chad Nusbaum, H.; Lee Taylor, D. 2010: Phylogenetic and ecological analyses of soil and sporocarp DNA sequences reveal high diversity and strong habitat partitioning in the boreal ectomycorrhizal genus Russula (Russulales; Basidiomycota). New Phytologist 187(2): 494-507

Boland, T.A.; McGuone, D.; Jindal, J.; Rocha, M.; Cumming, M.; Rupprecht, C.E.; Barbosa, T.F.S.; de Novaes Oliveira, R.; Chu, C.J.; Cole, A.J.; Kotait, I.; Kuzmina, N.A.; Yager, P.A.; Kuzmin, I.V.; Hedley-Whyte, E.T.; Brown, C.M.; Rosenthal, E.S. 2014: Phylogenetic and epidemiologic evidence of multiyear incubation in human rabies. Annals of Neurology 75(1): 155-160

Miller, M.W.; Hause, B.M.; Killion, H.J.; Fox, K.A.; Edwards, W.H.; Wolfe, L.L. 2013: Phylogenetic and epidemiologic relationships among Pasteurellaceae from Colorado bighorn sheep herds. Journal of Wildlife Diseases 49(3): 653-660

Baillie, G.J.; Kolokotronis, S.-O.; Waltari, E.; Maffei, J.G.; Kramer, L.D.; Perkins, S.L. 2008: Phylogenetic and evolutionary analyses of St. Louis encephalitis virus genomes. Molecular Phylogenetics and Evolution 47(2): 717-728

Zhang, C.-Y.; Lu, X.-J.; Du, X.-Q.; Jian, J.; Shu, L.; Ma, Y. 2013: Phylogenetic and evolutionary analysis of Chinese Leishmania isolates based on multilocus sequence typing. Plos one 8(4): E63124

Xu, Q.; Biswas, M.K.; Lan, H.; Zeng, W.; Liu, C.; Xu, J.; Deng, X. 2011: Phylogenetic and evolutionary analysis of NBS-encoding genes in Rutaceae fruit crops. Molecular Genetics and Genomics: Mgg 285(2): 151-161

Montieri, S.; Suffredini, E.; Ciccozzi, M.; Croci, L. 2010: Phylogenetic and evolutionary analysis of Vibrio parahaemolyticus and Vibrio alginolyticus isolates based on toxR gene sequence. New Microbiologica 33(4): 359-372

Babakir-Mina, M.; Dimonte, S.; Lo Presti, A.; Cella, E.; Perno, C.F.; Ciotti, M.; Ciccozzi, M. 2014: Phylogenetic and evolutionary analysis of influenza a H7N9 virus. New Microbiologica 37(3): 369-376

Yang, J-Rong.; Huang, Y-Pin.; Chang, F-Yee.; Hsu, L-Ching.; Lin, Y-Cheng.; Huang, H-Yi.; Wu, F-Ting.; Wu, H-Sheng.; Liu, M-Tsan. 2012: Phylogenetic and evolutionary history of influenza B viruses, which caused a large epidemic in 2011-2012, Taiwan. PloS one 7(10): e47179

Klassen, J.L. 2010: Phylogenetic and evolutionary patterns in microbial carotenoid biosynthesis are revealed by comparative genomics. Plos one 5(6): E11257

Yeo, G.H.; Cheah, F.S.H.; Winkler, C.; Jabs, E.W.; Venkatesh, B.; Chong, S.S. 2009: Phylogenetic and evolutionary relationships and developmental expression patterns of the zebrafish twist gene family. Development Genes and Evolution 219(6): 289-300

Tabita, F.R.; Hanson, T.E.; Satagopan, S.; Witte, B.H.; Kreel, N.E. 2008: Phylogenetic and evolutionary relationships of RubisCO and the RubisCO-like proteins and the functional lessons provided by diverse molecular forms. Philosophical Transactions of the Royal Society of London. Series B Biological Sciences 363(1504): 2629-2640

Rouxel, M.él.; Mestre, P.; Comont, G.; Lehman, B.L.; Schilder, A.; Delmotte, F.ço. 2013: Phylogenetic and experimental evidence for host-specialized cryptic species in a biotrophic oomycete. New Phytologist 197(1): 251-263

Weber, M.G.; Clement, W.L.; Donoghue, M.J.; Agrawal, A.A. 2012: Phylogenetic and experimental tests of interactions among mutualistic plant defense traits in Viburnum (adoxaceae). American Naturalist 180(4): 450-463

Peal, L.; Jambunathan, N.; Mahalingam, R. 2011: Phylogenetic and expression analysis of RNA-binding proteins with triple RNA recognition motifs in plants. Molecules and Cells 31(1): 55-64

Kasamatsu, J.; Oshiumi, H.; Matsumoto, M.; Kasahara, M.; Seya, T. 2010: Phylogenetic and expression analysis of lamprey toll-like receptors. Developmental and Comparative Immunology 34(8): 855-865

Calderon, S.; Perez-Benedico, D.; Mesa, L.; Guyton, D.; Rowold, D.J.; Herrera, R.J. 2013: Phylogenetic and forensic studies of the Southeast Florida Hispanic population using the next-generation forensic PowerPlex® Y23 STR marker system. Legal Medicine 15(6): 289-292

Strempel, J.M.; Grenningloh, R.; Ho, I.-C.; Vercelli, D. 2010: Phylogenetic and functional analysis identifies Ets-1 as a novel regulator of the Th2 cytokine gene locus. Journal of Immunology 184(3): 1309-1316

Zhang, M.; Liu, N.; Qian, C.; Wang, Q.; Wang, Q.; Long, Y.; Huang, Y.; Zhou, Z.; Yan, X. 2014: Phylogenetic and functional analysis of gut microbiota of a fungus-growing higher termite: Bacteroidetes from higher termites are a rich source of β-glucosidase genes. Microbial Ecology 68(2): 416-425

Dang, L.T.; Purvis, A.R.; Huang, R.-H.; Westfield, L.A.; Sadler, J.E. 2011: Phylogenetic and functional analysis of histidine residues essential for pH-dependent multimerization of von Willebrand factor. Journal of Biological Chemistry 286(29): 25763-25769

Kirischian, N.; McArthur, A.G.; Jesuthasan, C.; Krattenmacher, B.; Wilson, J.Y. 2011: Phylogenetic and functional analysis of the vertebrate cytochrome p450 2 family. Journal of Molecular Evolution 72(1): 56-71

Altenhoff, A.M.; Dessimoz, C. 2009: Phylogenetic and functional assessment of orthologs inference projects and methods. Plos Computational Biology 5(1): E1000262

Kveberg, L.; Dai, K.-Z.; Inngjerdingen, M.; Brooks, C.G.; Fossum, S.ør.; Vaage, J.T. 2011: Phylogenetic and functional conservation of the NKR-P1F and NKR-P1G receptors in rat and mouse. Immunogenetics 63(7): 429-436

Letten, A.D.; Keith, D.A.; Tozer, M.G. 2014: Phylogenetic and functional dissimilarity does not increase during temporal heathland succession. PROCEEDINGS. Biological Sciences 281(1797)

Yousaf, S.; Andria, V.; Reichenauer, T.G.; Smalla, K.; Sessitsch, A. 2010: Phylogenetic and functional diversity of alkane degrading bacteria associated with Italian ryegrass (Lolium multiflorum) and Birdsfoot trefoil (Lotus corniculatus) in a petroleum oil-contaminated environment. Journal of Hazardous Materials 184(1-3): 523-532

Tago, K.; Ishii, S.; Nishizawa, T.; Otsuka, S.; Senoo, K. 2011: Phylogenetic and functional diversity of denitrifying bacteria isolated from various rice paddy and rice-soybean rotation fields. Microbes and Environments 26(1): 30-35

Silva, C.C.; Hayden, H.; Sawbridge, T.; Mele, P.; Kruger, R.H.; Rodrigues, M.V.; Costa, G.G.; Vidal, R.O.; Sousa, M.ír.P.; Torres, A.P.R.; Santiago, V.ân.M.; Oliveira, V.ér.M. 2012: Phylogenetic and functional diversity of metagenomic libraries of phenol degrading sludge from petroleum refinery wastewater treatment system. Amb Express 2(1): 18

Vigneron, A.; Cruaud, P.; Roussel, E.G.; Pignet, P.; Caprais, J.-C.; Callac, N.; Ciobanu, M.-C.; Godfroy, A.; Cragg, B.A.; Parkes, J.R.; Van Nostrand, J.D.; He, Z.; Zhou, J.; Toffin, L. 2014: Phylogenetic and functional diversity of microbial communities associated with subsurface sediments of the Sonora Margin, Guaymas Basin. Plos one 9(8): E104427

Kuppardt, A.; Kleinsteuber, S.; Vogt, C.; Lüders, T.; Harms, H.; Chatzinotas, A. 2014: Phylogenetic and functional diversity within toluene-degrading, sulphate-reducing consortia enriched from a contaminated aquifer. Microbial Ecology 68(2): 222-234

Junier, P.; Molina, V.ón.; Dorador, C.; Hadas, O.; Kim, O.-S.; Junier, T.; Witzel, J.-P.; Imhoff, J.F. 2010: Phylogenetic and functional marker genes to study ammonia-oxidizing microorganisms (AOM) in the environment. Applied Microbiology and Biotechnology 85(3): 425-440

Kisand, V.; Valente, A.; Lahm, A.; Tanet, G.; Lettieri, T. 2012: Phylogenetic and functional metagenomic profiling for assessing microbial biodiversity in environmental monitoring. Plos one 7(8): E43630

Wu, X.; Liu, L.; Zhang, Z.; Deng, F.; Liu, X. 2014: Phylogenetic and genetic characterization of Acidithiobacillus strains isolated from different environments. World Journal of Microbiology and Biotechnology 30(12): 3197-3209

Romá-Mateo, C.; Sacristán-Reviriego, A.; Beresford, N.J.; Caparrós-Martín, J.é A.; Culiáñez-Macià, F.A.; Martín, H.; Molina, M.ía.; Tabernero, L.; Pulido, R. 2011: Phylogenetic and genetic linkage between novel atypical dual-specificity phosphatases from non-metazoan organisms. Molecular Genetics and Genomics: Mgg 285(4): 341-354

Amouric, A.ès.; Brochier-Armanet, C.él.; Johnson, D.B.; Bonnefoy, V.; Hallberg, K.B. 2011: Phylogenetic and genetic variation among Fe(II)-oxidizing acidithiobacilli supports the view that these comprise multiple species with different ferrous iron oxidation pathways. Microbiology 157(Part 1): 111-122

Pérez, R.; Calleros, L.ía.; Marandino, A.; Sarute, N.ás.; Iraola, G.; Grecco, S.; Blanc, H.é; Vignuzzi, M.; Isakov, O.; Shomron, N.; Carrau, L.ía.; Hernández, M.ín.; Francia, L.; Sosa, K.; Tomás, G.; Panzera, Y. 2014: Phylogenetic and genome-wide deep-sequencing analyses of canine parvovirus reveal co-infection with field variants and emergence of a recent recombinant strain. Plos one 9(11): E111779

Jaureguy, F.ço.; Landraud, L.; Passet, V.; Diancourt, L.; Frapy, E.; Guigon, G.; Carbonnelle, E.; Lortholary, O.; Clermont, O.; Denamur, E.; Picard, B.; Nassif, X.; Brisse, S. 2008: Phylogenetic and genomic diversity of human bacteremic Escherichia coli strains. Bmc Genomics 9: 560

Chan, P.A.; Reitsma, M.B.; DeLong, A.; Boucek, B.; Nunn, A.; Salemi, M.; Kantor, R. 2014: Phylogenetic and geospatial evaluation of HIV-1 subtype diversity at the largest HIV center in Rhode Island. Infection Genetics and Evolution: Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases 28: 358-366

Offerman, K.; Carulei, O.; Gous, T.A.; Douglass, N.; Williamson, A.-L. 2013: Phylogenetic and histological variation in avipoxviruses isolated in South Africa. Journal of General Virology 94(Part 10): 2338-2351

Bhowmik, S.K.; Pazhani, G.P.; Ramamurthy, T. 2014: Phylogenetic and in silico functional analyses of thermostable-direct hemolysin and tdh-related encoding genes in Vibrio parahaemolyticus and other Gram-negative bacteria. Biomed Research International 2014: 576528

Cardona, F.; Sánchez-Mut, J.V.; Dopazo, H.án.; Pérez-Tur, J. 2011: Phylogenetic and in silico structural analysis of the Parkinson disease-related kinase PINK1. Human Mutation 32(4): 369-378

Zhang, H.; Chen, X.; Braithwaite, D.; He, Z. 2014: Phylogenetic and metagenomic analyses of substrate-dependent bacterial temporal dynamics in microbial fuel cells. Plos one 9(9): E107460

Ruibal, M.P.; Peakall, R.; Smith, L.M.; Linde, C.C. 2013: Phylogenetic and microsatellite markers for Tulasnella (Tulasnellaceae) mycorrhizal fungi associated with Australian orchids. Applications in Plant Sciences 1(3)

Nagy, A.; Jiřincová, H.; Havlíčková, M.; Džupová, O.; Herrmannová, K.; Trojánek, M.; Kynčl, J.; Blechová, Z.; Marešová, V. 2014: Phylogenetic and molecular analysis of A/H1N1pdm influenza viruses isolated in the epidemic season 2012/2013 from hospitalised patients with -symptoms of influenza-like illness. Epidemiologie Mikrobiologie Imunologie: Casopis Spolecnosti Pro Epidemiologii a Mikrobiologii Ceske Lekarske Spolecnosti J.E. Purkyne 63(2): 83-87

Bi, J.; Deng, G.; Dong, J.; Kong, F.; Li, X.; Xu, Q.; Zhang, M.; Zhao, L.; Qiao, J. 2010: Phylogenetic and molecular characterization of H9N2 influenza isolates from chickens in Northern China from 2007-2009. PloS one 5(9)

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Bountouri, M.; Fragkiadaki, E.; Ntafis, V.; Kanellos, T.; Xylouri, E. 2011: Phylogenetic and molecular characterization of equine H3N8 influenza viruses from Greece (2003 and 2007): evidence for reassortment between evolutionary lineages. Virology Journal 8: 350

Lu, C.-C.; Chen, T.-H.; Wu, J.-R.; Chen, H.-H.; Yu, H.-Y.; Tarn, W.-Y. 2013: Phylogenetic and molecular characterization of the splicing factor RBM4. Plos one 8(3): E59092

Domínguez-Escobar, J.; Beltrán, Y.; Bergman, B.; Díez, B.; Ininbergs, K.; Souza, V.; Falcón, L.I. 2011: Phylogenetic and molecular clock inferences of cyanobacterial strains within Rivulariaceae from distant environments. Fems Microbiology Letters 316(2): 90-99

Jiang, L.; Wang, G.; Peng, R.; Peng, Q.; Zou, F. 2014: Phylogenetic and molecular dating analysis of Taiwan Blue Pheasant (Lophura swinhoii). Gene 539(1): 21-29

Lee, S-Won.; Devlin, J.M.; Markham, J.F.; Noormohammadi, A.H.; Browning, G.F.; Ficorilli, N.P.; Hartley, C.A.; Markham, P.F. 2013: Phylogenetic and molecular epidemiological studies reveal evidence of multiple past recombination events between infectious laryngotracheitis viruses. Plos one 8(2): E55121

Abraham, S.; Trott, D.J.; Jordan, D.; Gordon, D.M.; Groves, M.D.; Fairbrother, J.M.; Smith, M.G.; Zhang, R.; Chapman, T.A. 2014: Phylogenetic and molecular insights into the evolution of multidrug-resistant porcine enterotoxigenic Escherichia coli in Australia. International Journal of Antimicrobial Agents 44(2): 105-111

Zhang, Y.; Fournier, J.; Crous, P.W.; Pointing, S.B.; Hyde, K.D. 2009: Phylogenetic and morphological assessment of two new species of Amniculicola and their allies (Pleosporales). Persoonia 23: 48-54

Syasina, I.G.; Kukhlevsky, A.D.; Kovaleva, A.L.; Vaschenko, M.A. 2012: Phylogenetic and morphological characterization of the green alga infesting the horse mussel Modiolus modiolus from Vityaz Bay (Peter the Great Bay, Sea of Japan). Journal of Invertebrate Pathology 111(2): 175-181

Inoue, K.; Hayes, D.M.; Harris, J.L.; Christian, A.D. 2013: Phylogenetic and morphometric analyses reveal ecophenotypic plasticity in freshwater mussels Obovaria jacksoniana and Villosa arkansasensis (Bivalvia: Unionidae). Ecology and Evolution 3(8): 2670-2683

Ceja-Navarro, J.A.; Rivera-Orduña, F.N.; Patiño-Zúñiga, L.; Vila-Sanjurjo, A.ón.; Crossa, J.é; Govaerts, B.; Dendooven, L. 2010: Phylogenetic and multivariate analyses to determine the effects of different tillage and residue management practices on soil bacterial communities. Applied and Environmental Microbiology 76(11): 3685-3691

Jóźwiak, M. 2001: Phylogenetic and ontogenetic basis of normal and pathological gait development in children with cerebral palsy. Ortopedia Traumatologia Rehabilitacja 3(4): 462-466

Zhao, D.; Liang, L.; Li, Y.; Jiang, Y.; Liu, L.; Chen, H. 2012: Phylogenetic and pathogenic analyses of avian influenza a H5N1 viruses isolated from poultry in Vietnam. Plos one 7(11): E50959

Zhu, W.; Dong, J.; Xie, Z.; Liu, Q.; Khan, M.I. 2010: Phylogenetic and pathogenic analysis of Newcastle disease virus isolated from house sparrow (Passer domesticus) living around poultry farm in southern China. Virus Genes 40(2): 231-235

Zhang, S.; Wang, X.; Zhao, C.; Liu, D.; Hu, Y.; Zhao, J.; Zhang, G. 2011: Phylogenetic and pathotypical analysis of two virulent Newcastle disease viruses isolated from domestic ducks in China. Plos one 6(9): E25000

McCormick, M.A.; Grand, L.F.; Post, J.B.; Cubeta, M.A. 2013: Phylogenetic and phenotypic characterization of Fomes fasciatus and Fomes fomentarius in the United States. Mycologia 105(6): 1524-1534

Almeida, C.E.; Marcet, P.L.; Gumiel, M.; Takiya, D.M.; Cardozo-de-Almeida, M.; Pacheco, R.S.; Lopes, C.M.; Dotson, E.M.; Costa, J. 2009: Phylogenetic and phenotypic relationships among Triatoma carcavalloi (Hemiptera: Reduviidae: Triatominae) and related species collected in domiciles in Rio Grande do Sul State, Brazil. Journal of Vector Ecology: Journal of the Society for Vector Ecology 34(2): 164-173

Boyer, Mël.; Madoui, M-Amine.; Gimenez, G.; La Scola, B.; Raoult, D. 2010: Phylogenetic and phyletic studies of informational genes in genomes highlight existence of a 4 domain of life including giant viruses. PloS one 5(12): e15530

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Kim, H.K.; Luo, Y.; Moon, H.J.; Park, S.J.; Keum, H.O.; Rho, S.; Park, B.K. 2009: Phylogenetic and recombination analysis of genomic sequences of PCV2 isolated in Korea. Virus Genes 39(3): 352-358

Cheng, W.; Chen, J.; Xu, Z.; Yu, J.; Huang, C.; Jin, M.; Li, H.; Zhang, M.; Jin, Y.; Duan, Z.-J. 2011: Phylogenetic and recombination analysis of human bocavirus 2. Bmc Infectious Diseases 11: 50

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Watanabe, S.; Kawamura, M.; Odahara, Y.; Anai, Y.; Ochi, H.; Nakagawa, S.; Endo, Y.; Tsujimoto, H.; Nishigaki, K. 2013: Phylogenetic and structural diversity in the feline leukemia virus env gene. Plos one 8(4): E61009

Landa, M.; Cottrell, M.T.; Kirchman, D.L.; Kaiser, K.; Medeiros, P.M.; Tremblay, L.; Batailler, N.; Caparros, J.; Catala, P.; Escoubeyrou, K.; Oriol, L.; Blain, S.; Obernosterer, I. 2014: Phylogenetic and structural response of heterotrophic bacteria to dissolved organic matter of different chemical composition in a continuous culture study. Environmental Microbiology 16(6): 1668-1681

Dias, P.J.; Sá-Correia, I. 2014: Phylogenetic and syntenic analyses of the 12-spanner drug:H(+) antiporter family 1 (DHA1) in pathogenic Candida species: evolution of MDR1 and FLU1 genes. Genomics 104(1): 45-57

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Ye, J.; Lu, H.; Su, X.; Xin, R.; Bai, L.; Xu, K.; Yu, S.; Feng, X.; Yan, H.; He, X.; Zeng, Y. 2014: Phylogenetic and temporal dynamics of human immunodeficiency virus type 1B in China: four types of B strains circulate in China. Aids Research and Human Retroviruses 30(9): 920-926

Maherali, H.; Klironomos, J.N. 2012: Phylogenetic and trait-based assembly of arbuscular mycorrhizal fungal communities. Plos one 7(5): E36695

Song, A.; Li, P.; Jiang, J.; Chen, S.; Li, H.; Zeng, J.; Shao, Y.; Zhu, L.; Zhang, Z.; Chen, F. 2014: Phylogenetic and transcription analysis of chrysanthemum WRKY transcription factors. International Journal of Molecular Sciences 15(8): 14442-14455

Ye, W.; Wang, Y.; Dong, S.; Tyler, B.M.; Wang, Y. 2013: Phylogenetic and transcriptional analysis of an expanded bZIP transcription factor family in Phytophthora sojae. Bmc Genomics 14: 839

Zhou, X.; Slone, J.D.; Rokas, A.; Berger, S.L.; Liebig, J.ür.; Ray, A.; Reinberg, D.; Zwiebel, L.J. 2012: Phylogenetic and transcriptomic analysis of chemosensory receptors in a pair of divergent ant species reveals sex-specific signatures of odor coding. Plos Genetics 8(8): E1002930

Gäumann, R.; Růžek, D.; Mühlemann, K.; Strasser, M.; Beuret, C.M. 2011: Phylogenetic and virulence analysis of tick-borne encephalitis virus field isolates from Switzerland. Journal of Medical Virology 83(5): 853-863

Liu, Q.-H.; Guo, Z.-G.; Ren, J.-H. 2012: Phylogenetic application and analysis of horizontal transfer based on the prokaryote eno gene. Yi Chuan 34(7): 907-918

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Chellapandi, P.; Sakthishree, S.; Bharathi, M. 2013: Phylogenetic approach for inferring the origin and functional evolution of bacterial ADP-ribosylation superfamily. Protein and Peptide Letters 20(9): 1054-1065

Alizon, S.; von Wyl, V.; Stadler, T.; Kouyos, R.D.; Yerly, S.; Hirschel, B.; Böni, J.ür.; Shah, C.; Klimkait, T.; Furrer, H.; Rauch, A.; Vernazza, P.L.; Bernasconi, E.; Battegay, M.; Bürgisser, P.; Telenti, A.; Günthard, H.F.; Bonhoeffer, S. 2010: Phylogenetic approach reveals that virus genotype largely determines HIV set-point viral load. Plos Pathogens 6(9): E1001123

Henriques-Gil, N.; Haro, M.ía.; Izquierdo, F.; Fenoy, S.; del Aguila, C. 2010: Phylogenetic approach to the variability of the microsporidian Enterocytozoon bieneusi and its implications for inter- and intrahost transmission. Applied and Environmental Microbiology 76(10): 3333-3342

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Krogman, W.M. 1946: Phylogenetic aspects of suture closure. American Journal of Physical Anthropology 4: 263

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Peterson, A.T.; Holder, M.T. 2012: Phylogenetic assessment of filoviruses: how many lineages of Marburg virus?. Ecology and Evolution 2(8): 1826-1833

Sato, T.; Yokota, S-Ichi.; Okubo, T.; Usui, M.; Fujii, N.; Tamura, Y. 2014: Phylogenetic association of fluoroquinolone and cephalosporin resistance of D-O1-ST648 Escherichia coli carrying blaCMY-2 from faecal samples of dogs in Japan. Journal of Medical Microbiology 63(Pt 2): 263-270

Arora, J.; Sidiq, Z.; Sharma, S.; Singhal, R.; Bhalla, M.; Couvin, D.; Sarin, R.; Rastogi, N.; Myneedu, V.P. 2014: Phylogenetic associations with drug-resistant Mycobacterium tuberculosis isolates in a paediatric population. international journal of tuberculosis and lung disease: the official journal of the International Union against Tuberculosis and Lung Disease 18(10): 1172-1179

Ghanbarpour, R.; Sami, M.; Salehi, M.; Ouromiei, M. 2011: Phylogenetic background and virulence genes of Escherichia coli isolates from colisepticemic and healthy broiler chickens in Iran. Tropical Animal Health and Production 43(1): 153-157

Graziani, C.; Luzzi, I.; Corro, M.; Tomei, F.; Parisi, G.; Giufre, M.; Morabito, S.; Caprioli, A.; Cerquetti, M. 2009: Phylogenetic background and virulence genotype of ciprofloxacin-susceptible and ciprofloxacin-resistant Escherichia coli strains of human and avian origin. Journal of Infectious Diseases 199(8): 1209-1217

Afset, J.E.; Anderssen, E.; Bruant, G.; Harel, J.ée.; Wieler, L.; Bergh, K.år. 2008: Phylogenetic backgrounds and virulence profiles of atypical enteropathogenic Escherichia coli strains from a case-control study using multilocus sequence typing and DNA microarray analysis. Journal of Clinical Microbiology 46(7): 2280-2290

Swenson, N.G. 2011: Phylogenetic beta diversity metrics, trait evolution and inferring the functional beta diversity of communities. Plos one 6(6): E21264

Telleria, J.; Biron, D.G.; Brizard, J.-P.; Demettre, E.; Séveno, M.; Barnabé, C.; Ayala, F.J.; Tibayrenc, M. 2010: Phylogenetic character mapping of proteomic diversity shows high correlation with subspecific phylogenetic diversity in Trypanosoma cruzi. Proceedings of the National Academy of Sciences of the United States of America 107(47): 20411-20416

Terefe, Y.; Hailemariam, Z.; Menkir, S.; Nakao, M.; Lavikainen, A.; Haukisalmi, V.; Iwaki, T.; Okamoto, M.; Ito, A. 2014: Phylogenetic characterisation of Taenia tapeworms in spotted hyenas and reconsideration of the "Out of Africa" hypothesis of Taenia in humans. International Journal for Parasitology 44(8): 533-541

Samman, A.; McMonagle, E.L.; Logan, N.; Willett, B.J.; Biek, R.; Hosie, M.J. 2011: Phylogenetic characterisation of naturally occurring feline immunodeficiency virus in the United Kingdom. Veterinary Microbiology 150(3-4): 239-247

Balcázar, J.é L.; Lee, N.M.; Pintado, J.é; Planas, M. 2010: Phylogenetic characterization and in situ detection of bacterial communities associated with seahorses (Hippocampus guttulatus) in captivity. Systematic and Applied Microbiology 33(2): 71-77

Chiotta, M.L.; Susca, A.; Stea, G.; Mulè, G.; Perrone, G.; Logrieco, A.; Chulze, S.N. 2011: Phylogenetic characterization and ochratoxin A--fumonisin profile of black Aspergillus isolated from grapes in Argentina. International Journal of Food Microbiology 149(2): 171-176

Plasencia, A.; Gich, F.; Fillol, M.; Borrego, C.M. 2013: Phylogenetic characterization and quantification of ammonia-oxidizing archaea and bacteria from Lake Kivu in a long-term microcosm incubation. International Microbiology: the Official Journal of the Spanish Society for Microbiology 16(3): 177-189

Liu, H.; Zhang, P.; Wu, P.; Chen, S.; Mu, G.; Duan, X.; Hao, H.; Du, E.; Wang, X.; Yang, Z. 2013: Phylogenetic characterization and virulence of two Newcastle disease viruses isolated from wild birds in China. Infection Genetics and Evolution: Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases 20: 215-224

Duarte, S.C.; Parente, J.A.; Pereira, M.; Soares, C.él.M.d.A.; Linhares, G.F.C. 2011: Phylogenetic characterization of Babesia canis vogeli in dogs in the state of Goiás, Brazil. Revista Brasileira de Parasitologia Veterinaria 20(4): 274-280

Stanton, E.; Park, D.; Döpfer, D.ör.; Ivanek, R.; Kaspar, C.W. 2014: Phylogenetic characterization of Escherichia coli O157 : H7 based on IS629 distribution and Shiga toxin genotype. Microbiology 160(Part 3): 502-513

Takano, R.; Nidom, C.A.; Kiso, M.; Muramoto, Y.; Yamada, S.; Sakai-Tagawa, Y.; Macken, C.; Kawaoka, Y. 2009: Phylogenetic characterization of H5N1 avian influenza viruses isolated in Indonesia from 2003-2007. Virology 390(1): 13-21

Rui, Z.; Juan, P.; Jingliang, S.; Jixun, Z.; Xiaoting, W.; Shouping, Z.; Xiaojiao, L.; Guozhong, Z. 2010: Phylogenetic characterization of Newcastle disease virus isolated in the mainland of China during 2001-2009. Veterinary microbiology 141(3-4): 246-257

Suzuki, T.; Hasebe, A.; Miyazaki, A.; Tsunemitsu, H. 2014: Phylogenetic characterization of VP6 gene (inner capsid) of porcine rotavirus C collected in Japan. Infection Genetics and Evolution: Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases 26: 223-227

Guan, R.; Shen, Z.; Zhu, F.; Chen, D.; Zhang, J.; Hou, J.; Dong, S.; Tang, X.; Xu, L. 2012: Phylogenetic characterization of a microsporidium (Nosema sp.) isolated from the mulberry pest, Hemerophila atrilineata. Folia Parasitologica 59(2): 87-92

Ahmad, N.; Johri, S.; Sultan, P.; Abdin, M.Z.; Qazi, G.N. 2011: Phylogenetic characterization of archaea in saltpan sediments. Indian Journal of Microbiology 51(2): 132-137

Gupta, A.K.; Nayduch, D.; Verma, P.; Shah, B.; Ghate, H.V.; Patole, M.S.; Shouche, Y.S. 2012: Phylogenetic characterization of bacteria in the gut of house flies (Musca domestica L.). Fems Microbiology Ecology 79(3): 581-593

De Almeida Vaucher, R.; Dezen, D.; Simonetti, A.B.; Spilki, F.R.; Roehe, P.M. 2011: Phylogenetic characterization of bovine parainfluenza 3 from contaminated cell cultures and field isolates from Brazil. Brazilian Journal of Microbiology: 42(4): 1440-1444

Nithyanand, P.; Manju, S.; Karutha Pandian, S. 2011: Phylogenetic characterization of culturable actinomycetes associated with the mucus of the coral Acropora digitifera from Gulf of Mannar. Fems Microbiology Letters 314(2): 112-118

Nithyanand, P.; Pandian, S.K. 2009: Phylogenetic characterization of culturable bacterial diversity associated with the mucus and tissue of the coral Acropora digitifera from the Gulf of Mannar. Fems Microbiology Ecology 69(3): 384-394

Piralla, A.; Girello, A.; Grignani, M.; Gozalo-Margüello, M.; Marchi, A.; Marseglia, G.; Baldanti, F. 2014: Phylogenetic characterization of enterovirus 68 strains in patients with respiratory syndromes in Italy. Journal of Medical Virology 86(9): 1590-1593

Bates, A.E.; Harmer, T.L.; Roeselers, G.; Cavanaugh, C.M. 2011: Phylogenetic characterization of episymbiotic bacteria hosted by a hydrothermal vent limpet (lepetodrilidae, vetigastropoda). Biological Bulletin 220(2): 118-127

Middelbos, I.S.; Vester Boler, B.M.; Qu, A.; White, B.A.; Swanson, K.S.; Fahey, G.C. 2010: Phylogenetic characterization of fecal microbial communities of dogs fed diets with or without supplemental dietary fiber using 454 pyrosequencing. Plos one 5(3): E9768

Wang, M.; Li, G.; Yin, J.; Ren, X. 2009: Phylogenetic characterization of genes encoding for glycoprotein 5 and membrane protein of PRRSV isolate HH08. Journal of Veterinary Science 10(4): 309-315

Raboni, S.M.; Hoffmann, F.G.; Oliveira, R.C.; Teixeira, B.R.; Bonvicino, C.R.; Stella, V.; Carstensen, S.; Bordignon, J.; D'Andrea, P.S.; Lemos, E.R.S.; Duarte Dos Santos, C.N. 2009: Phylogenetic characterization of hantaviruses from wild rodents and hantavirus pulmonary syndrome cases in the state of Parana (southern Brazil). Journal of General Virology 90(Part 9): 2166-2171

Hanna, L.E.; Neogi, U.; Ranga, U.; Swaminathan, S.; Prasad, V.R. 2014: Phylogenetic characterization of six full-length HIV-1 subtype C molecular clones from three patients: identification of rare subtype C strains containing two NF-κB motifs in the long terminal repeat. Aids Research and Human Retroviruses 30(6): 586-591

Michaud, L.; Lo Giudice, A.; Troussellier, M.; Smedile, F.; Bruni, V.; Blancheton, J.P. 2009: Phylogenetic characterization of the heterotrophic bacterial communities inhabiting a marine recirculating aquaculture system. Journal of Applied Microbiology 107(6): 1935-1946

Goto, T.V.; Tamate, H.B.; Hanzawa, N. 2011: Phylogenetic characterization of three morphs of mussels (Bivalvia, Mytilidae) inhabiting isolated marine environments in Palau Islands. Zoological Science 28(8): 568-579

Chen, J.S.; Reddy, V.; Chen, J.H.; Shlykov, M.A.; Zheng, W.Hao.; Cho, J.; Yen, M.Ren.; Saier, M.H. 2011: Phylogenetic characterization of transport protein superfamilies: superiority of SuperfamilyTree programs over those based on multiple alignments. Journal of Molecular Microbiology and Biotechnology 21(3-4): 83-96

Roh, S.W.; Nam, Y.-D.; Chang, H.-W.; Kim, K.-H.; Kim, M.-S.; Ryu, J.-H.; Kim, S.-H.; Lee, W.-J.; Bae, J.-W. 2008: Phylogenetic characterization of two novel commensal bacteria involved with innate immune homeostasis in Drosophila melanogaster. Applied and Environmental Microbiology 74(20): 6171-6177

Demeler, J.; Krüger, N.; Krücken, J.ür.; von der Heyden, V.C.; Ramünke, S.; Küttler, U.; Miltsch, S.; López Cepeda, M.; Knox, M.; Vercruysse, J.; Geldhof, P.; Harder, A.; von Samson-Himmelstjerna, G. 2013: Phylogenetic characterization of β-tubulins and development of pyrosequencing assays for benzimidazole resistance in cattle nematodes. Plos one 8(8): E70212

Giraldo, A.; Gené, J.; Sutton, D.A.; Madrid, H.; Cano, J.; Crous, P.W.; Guarro, J. 2014: Phylogenetic circumscription of Arthrographis (Eremomycetaceae, Dothideomycetes). Persoonia 32: 102-114

Melo, T.C.; Carvalho, R.F.; Mazzucchelli-de-Souza, J.; Diniz, N.; Vasconcelos, S.; Assaf, S.L.M.R.; Araldi, R.P.; Ruiz, R.M.; Kerkis, I.; Beçak, W.; Stocco, R.C. 2014: Phylogenetic classification and clinical aspects of a new putative Deltapapillomavirus associated with skin lesions in cattle. Genetics and Molecular Research: Gmr 13(2): 2458-2469

Parnmen, S.; Lücking, R.; Lumbsch, H.T. 2012: Phylogenetic classification at generic level in the absence of distinct phylogenetic patterns of phenotypical variation: a case study in graphidaceae (ascomycota). Plos one 7(12): E51392

Clawson, M.L.; Keen, J.E.; Smith, T.P.L.; Durso, L.M.; McDaneld, T.G.; Mandrell, R.E.; Davis, M.A.; Bono, J.L. 2009: Phylogenetic classification of Escherichia coli O157:H7 strains of human and bovine origin using a novel set of nucleotide polymorphisms. Genome Biology 10(5): R56

Nohira, C.; Maruyama, S.; Minaguchi, K. 2010: Phylogenetic classification of Japanese mtDNA assisted by complete mitochondrial DNA sequences. International Journal of Legal Medicine 124(1): 7-12

Réblová, M.; Seifert, K.A.; Fournier, J.; Stepánek, V.ác. 2012: Phylogenetic classification of Pleurothecium and Pleurotheciella gen. nov. and its dactylaria-like anamorph (Sordariomycetes) based on nuclear ribosomal and protein-coding genes. Mycologia 104(6): 1299-1314

Teramoto, K.; Sato, H.; Sun, L.; Torimura, M.; Tao, H.; Yoshikawa, H.; Hotta, Y.; Hosoda, A.; Tamura, H. 2007: Phylogenetic classification of Pseudomonas putida strains by MALDI-MS using ribosomal subunit proteins as biomarkers. Analytical Chemistry 79(22): 8712-8719

Hube, A.E.; Heyduck-Söller, B.; Fischer, U. 2009: Phylogenetic classification of heterotrophic bacteria associated with filamentous marine cyanobacteria in culture. Systematic and Applied Microbiology 32(4): 256-265

Pitta, D.R.; Sarian, L.O.áv.; Campos, E.A.; Rabelo-Santos, S.íl.H.; Syrjänen, K.; Derchain, S.F.ço. 2009: Phylogenetic classification of human papillomavirus genotypes in high-grade cervical intraepithelial neoplasia in women from a densely populated Brazilian urban region. Sao Paulo Medical Journal 127(3): 122-127

Chu, H.; Park, S.-H.; Kim, E.-J.; Hwang, K.-J.; Shim, S.-K.; Park, S.; Park, M.-Y. 2010: Phylogenetic clustering of 4 prevalent virulence genes in Orientia tsutsugamushi isolates from human patients. Journal of Microbiology 48(1): 124-128

Jacka, B.; Applegate, T.; Krajden, M.; Olmstead, A.; Harrigan, P.R.; Marshall, B.; DeBeck, K.; Milloy, M.-J.; Lamoury, F.; Pybus, O.G.; Lima, V.D.; Magiorkinis, G.; Montoya, V.; Montaner, J.; Joy, J.; Woods, C.; Dobrer, S.; Dore, G.J.; Poon, A.F.; Grebely, J. 2014: Phylogenetic clustering of hepatitis C virus among people who inject drugs in Vancouver, Canada. Hepatology 60(5): 1571-1580

Kraut, A.; Moretti, S.éb.; Robinson-Rechavi, M.; Stockinger, H.; Flanders, D. 2010: Phylogenetic code in the cloud - can it meet the expectations?. Studies in Health Technology and Informatics 159: 55-63

Elias, M.; Gompert, Z.; Willmott, K.; Jiggins, C. 2009: Phylogenetic community ecology needs to take positive interactions into account: Insights from colourful butterflies. Communicative and Integrative Biology 2(2): 113-116

Santorelli, S.; Magnusson, W.; Ferreira, E.; Caramaschi, E.; Zuanon, J.; Amadio, S.éi. 2014: Phylogenetic community structure: temporal variation in fish assemblage. Ecology and Evolution 4(11): 2146-2153

Husemann, P.; Stoye, J. 2010: Phylogenetic comparative assembly. Algorithms for Molecular Biology: Amb 5: 3

Barr, W.Andrew.; Scott, R.S. 2014: Phylogenetic comparative methods complement discriminant function analysis in ecomorphology. American Journal of Physical Anthropology 153(4): 663-674

Hua, Z.; Zou, C.; Shiu, S.-H.; Vierstra, R.D. 2011: Phylogenetic comparison of F-Box (FBX) gene superfamily within the plant kingdom reveals divergent evolutionary histories indicative of genomic drift. Plos one 6(1): E16219

Yoshimura, A.; Koketsu, M.; Bando, H.; Saiki, E.; Suzuki, M.; Watanabe, Y.; Kanuka, H.; Fukumoto, S. 2014: Phylogenetic comparison of avian haemosporidian parasites from resident and migratory birds in northern Japan. Journal of wildlife diseases 50(2): 235-242

Harishankar, A.; Jambulingam, M.; Gowrishankar, R.; Venkatachalam, A.; Vetrivel, U.; Ravichandran, S.; Yesupadam, S.Moses.; Madhavan, H.Narahari.Rao. 2012: Phylogenetic comparison of exonic US4, US7 and UL44 regions of clinical herpes simplex virus type 1 isolates showed lack of association between their anatomic sites of infection and genotypic/sub genotypic classification. Virology Journal 9: 65

Kim, J.; Lee, J.; Lee, S.; Lee, B.; Kim-Ha, J. 2014: Phylogenetic comparison of oskar mRNA localization signals. Biochemical and Biophysical Research Communications 444(1): 98-103

Prpić, J.; Keros, T.; Bedeković, T.; Brnić, D.; Cvetnić, Z.; Roić, B.; Jemeršić, L. 2014: Phylogenetic comparison of porcine circovirus type 2 (PCV2) and porcine reproductive respiratory syndrome virus (PRRSV) strains detected in domestic pigs until 2008 and in 2012 in Croatia. Irish Veterinary Journal 67(1): 9

Zhang, X.; Rossi, J.J. 2011: Phylogenetic comparison of small RNA-triggered transcriptional gene silencing. Journal of Biological Chemistry 286(34): 29443-29448

Grech, B.; Mathews, S.; Timms, P. 2008: Phylogenetic comparison of the known Chlamydia trachomatis sigma(66) promoters across to Chlamydia pneumoniae and Chlamydia caviae identifies seven poorly conserved promoters. Research in Microbiology 159(7-8): 550-556

Hammond, G.L.; Miguel-Queralt, S.; Yalcinkaya, T.M.; Underhill, C.; Place, N.J.; Glickman, S.E.; Drea, C.M.; Wagner, A.P.; Siiteri, P.K. 2012: Phylogenetic comparisons implicate sex hormone-binding globulin in "masculinization" of the female spotted hyena (Crocuta crocuta). Endocrinology 153(3): 1435-1443

Rocke, E.; Jing, H.; Liu, H. 2013: Phylogenetic composition and distribution of picoeukaryotes in the hypoxic northwestern coast of the Gulf of Mexico. Microbiologyopen 2(1): 130-143

Buckley, H.L.; Rafat, A.; Ridden, J.D.; Cruickshank, R.H.; Ridgway, H.J.; Paterson, A.M. 2014: Phylogenetic congruence of lichenised fungi and algae is affected by spatial scale and taxonomic diversity. Peerj 2: E573

Hou, Z.; Danzer, J.R.; Mendoza, L.; Bose, M.E.; Müller, U.; Williams, B.; Fox, C.A. 2009: Phylogenetic conservation and homology modeling help reveal a novel domain within the budding yeast heterochromatin protein Sir1. Molecular and Cellular Biology 29(3): 687-702

Russo, G.L.; Bilotto, S.; Ciarcia, G.; Tosti, E. 2009: Phylogenetic conservation of cytostatic factor related genes in the ascidian Ciona intestinalis. Gene 429(1-2): 104-111

Sun, Y.; Liu, Z.; Li, Z.; Lian, Z.; Zhao, Y. 2012: Phylogenetic conservation of the 3' cryptic recombination signal sequence (3'cRSS) in the VH genes of jawed vertebrates. Frontiers in Immunology 3: 392

Vansteenhouse, H.C.; Horton, Z.A.; O'Hagan, R.; Tai, M.-H.; Zipser, B. 2010: Phylogenetic conservation of the cell-type-specific Lan3-2 glycoepitope in Caenorhabditis elegans. Development Genes and Evolution 220(3-4): 77-87

Madeo, F.; Durchschlag, M.; Kepp, O.; Panaretakis, T.; Zitvogel, L.; Fröhlich, K.-U.; Kroemer, G. 2009: Phylogenetic conservation of the preapoptotic calreticulin exposure pathway from yeast to mammals. Cell Cycle 8(4): 639-642

Anacker, B.L.; Klironomos, J.N.; Maherali, H.; Reinhart, K.O.; Strauss, S.Y. 2014: Phylogenetic conservatism in plant-soil feedback and its implications for plant abundance. Ecology Letters 17(12): 1613-1621

Gao, F.; Fan, X.; Yi, Z.; Strüder-Kypke, M.; Song, W. 2010: Phylogenetic consideration of two scuticociliate genera, Philasterides and Boveria (Protozoa, Ciliophora) based on 18 S rRNA gene sequences. Parasitology International 59(4): 549-555

Jeffree, R.A.; Oberhansli, F.; Teyssie, J.-L. 2010: Phylogenetic consistencies among chondrichthyan and teleost fishes in their bioaccumulation of multiple trace elements from seawater. Science of the Total Environment 408(16): 3200-3210

Menge, D.N.L.; DeNoyer, J.L.; Lichstein, J.W. 2010: Phylogenetic constraints do not explain the rarity of nitrogen-fixing trees in late-successional temperate forests. Plos one 5(8): E12056

Zimmerman, A.E.; Allison, S.D.; Martiny, A.C. 2014: Phylogenetic constraints on elemental stoichiometry and resource allocation in heterotrophic marine bacteria. Environmental Microbiology 16(5): 1398-1410

Horiike, T.; Miyata, D.; Hamada, K.; Saruhashi, S.; Shinozawa, T.; Kumar, S.; Chakraborty, R.; Komiyama, T.; Tateno, Y. 2009: Phylogenetic construction of 17 bacterial phyla by new method and carefully selected orthologs. Gene 429(1-2): 59-64

Salonia, A. 2012: Phylogenetic continuum: sexuality over reproduction over sexuality over reproduction, and again and again!. European Urology 62(5): 863

Verde Arregoitia, L.D.; Blomberg, S.P.; Fisher, D.O. 2013: Phylogenetic correlates of extinction risk in mammals: species in older lineages are not at greater risk. PROCEEDINGS. Biological Sciences 280(1765): 20131092

Riveiro-Barciela, M.; Mínguez, B.; Gironés, R.; Rodriguez-Frías, F.; Quer, J.; Buti, M.ía. 2015: Phylogenetic demonstration of hepatitis e infection transmitted by pork meat ingestion. Journal of Clinical Gastroenterology 49(2): 165-168

Paine, C.E.T.; Norden, N.; Chave, J.ér.ôm.; Forget, P.-M.; Fortunel, C.; Dexter, K.G.; Baraloto, C. 2012: Phylogenetic density dependence and environmental filtering predict seedling mortality in a tropical forest. Ecology Letters 15(1): 34-41

Carlson, J.M.; Brumme, Z.L.; Rousseau, C.M.; Brumme, C.J.; Matthews, P.; Kadie, C.; Mullins, J.I.; Walker, B.D.; Harrigan, P.R.; Goulder, P.J.R.; Heckerman, D. 2008: Phylogenetic dependency networks: inferring patterns of CTL escape and codon covariation in HIV-1 Gag. Plos Computational Biology 4(11): E1000225

Chan, Y.-F.; Sam, I.-C.; AbuBakar, S. 2010: Phylogenetic designation of enterovirus 71 genotypes and subgenotypes using complete genome sequences. Infection Genetics and Evolution: Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases 10(3): 404-412

Veyrier, F.éd.ér.; Pletzer, D.; Turenne, C.; Behr, M.A. 2009: Phylogenetic detection of horizontal gene transfer during the step-wise genesis of Mycobacterium tuberculosis. Bmc Evolutionary Biology 9: 196

Zhou, X.; Lin, Z.; Ma, H. 2010: Phylogenetic detection of numerous gene duplications shared by animals, fungi and plants. Genome Biology 11(4): R38

Martins, L.d.O.; Leal, E.; Kishino, H. 2008: Phylogenetic detection of recombination with a Bayesian prior on the distance between trees. Plos one 3(7): E2651

De Vienne, D.M.; Hood, M.E.; Giraud, T. 2009: Phylogenetic determinants of potential host shifts in fungal pathogens. Journal of Evolutionary Biology 22(12): 2532-2541

Mohit, V.; Archambault, P.; Toupoint, N.; Lovejoy, C. 2014: Phylogenetic differences in attached and free-living bacterial communities in a temperate coastal lagoon during summer, revealed via high-throughput 16S rRNA gene sequencing. Applied and Environmental Microbiology 80(7): 2071-2083

Lipovsek, M.; Im, G.J.; Franchini, L.ía.F.; Pisciottano, F.; Katz, E.; Fuchs, P.A.; Elgoyhen, A.B.én. 2012: Phylogenetic differences in calcium permeability of the auditory hair cell cholinergic nicotinic receptor. Proceedings of the National Academy of Sciences of the United States of America 109(11): 4308-4313

Rabosky, D.L.; Hutchinson, M.N.; Donnellan, S.C.; Talaba, A.L.; Lovette, I.J. 2014: Phylogenetic disassembly of species boundaries in a widespread group of Australian skinks (Scincidae: Ctenotus). Molecular Phylogenetics and Evolution 77: 71-82

Weichselbaumer, M.; Willmann, M.; Reifinger, M.; Singer, J.; Bajna, E.; Sobanov, Y.; Mechtcherikova, D.; Selzer, E.; Thalhammer, J.G.; Kammerer, R.; Jensen-Jarolim, E. 2011: Phylogenetic discordance of human and canine carcinoembryonic antigen (CEA, CEACAM) families, but striking identity of the CEA receptors will impact comparative oncology studies. Plos Currents 3: Rrn1223

Venail, P.A.; Vives, M.J. 2013: Phylogenetic distance and species richness interactively affect the productivity of bacterial communities. Ecology 94(11): 2529-2536

Mazurie, A.él.; Bonchev, D.; Schwikowski, B.; Buck, G.A. 2008: Phylogenetic distances are encoded in networks of interacting pathways. Bioinformatics 24(22): 2579-2585

Brown, S.K.; Pedersen, N.C.; Jafarishorijeh, S.; Bannasch, D.L.; Ahrens, K.D.; Wu, J.-T.; Okon, M.; Sacks, B.N. 2011: Phylogenetic distinctiveness of Middle Eastern and Southeast Asian village dog y chromosomes illuminates dog origins. Plos one 6(12): E28496

Blackshear, P.J.; Perera, L. 2014: Phylogenetic distribution and evolution of the linked RNA-binding and NOT1-binding domains in the tristetraprolin family of tandem CCCH zinc finger proteins. Journal of Interferon and Cytokine Research: the Official Journal of the International Society for Interferon and Cytokine Research 34(4): 297-306

Geuverink, E.; Beukeboom, L.W. 2014: Phylogenetic distribution and evolutionary dynamics of the sex determination genes doublesex and transformer in insects. Sexual Development: Genetics Molecular Biology Evolution Endocrinology Embryology and Pathology of Sex Determination and Differentiation 8(1-3): 38-49

López-Ramírez, V.; Alcaraz, L.D.; Moreno-Hagelsieb, G.; Olmedo-Álvarez, G. 2011: Phylogenetic distribution and evolutionary history of bacterial DEAD-Box proteins. Journal of Molecular Evolution 72(4): 413-431

Hübscher, J.; Lüthy, L.; Berger-Bächi, B.; Stutzmann Meier, P. 2008: Phylogenetic distribution and membrane topology of the LytR-CpsA-Psr protein family. Bmc Genomics 9: 617

Ji, J.; Xie, J.; Chen, F.; Shu, D.; Zuo, K.; Xue, C.; Qin, J.; Li, H.; Bi, Y.; Ma, J.; Xie, Q. 2011: Phylogenetic distribution and predominant genotype of the avian infectious bronchitis virus in China during 2008-2009. Virology journal 8: 184

Dureja, C.; Mahajan, S.; Raychaudhuri, S. 2014: Phylogenetic distribution and prevalence of genes encoding class i Integrons and CTX-M-15 extended-spectrum β-lactamases in Escherichia coli isolates from healthy humans in Chandigarh, India. Plos one 9(11): E112551

Brisse, S.; Diancourt, L.; Laouénan, C.éd.; Vigan, M.; Caro, V.ér.; Arlet, G.; Drieux, L.; Leflon-Guibout, V.ér.; Mentré, F.; Jarlier, V.; Nicolas-Chanoine, M.-H.él.èn.; Akpabie, A.; Doit, C.; Gallah, S.; Kassis-Chikhani, N.; Marcon, E.; Moissenet, D.; Podglajen, I.; Verdet, C.; Vincent, C.; Zahar, J.-R. 2012: Phylogenetic distribution of CTX-M- and non-extended-spectrum-β-lactamase-producing Escherichia coli isolates: group B2 isolates, except clone ST131, rarely produce CTX-M enzymes. Journal of Clinical Microbiology 50(9): 2974-2981

Rainford, J.L.; Hofreiter, M.; Nicholson, D.B.; Mayhew, P.J. 2014: Phylogenetic distribution of extant richness suggests metamorphosis is a key innovation driving diversification in insects. Plos one 9(9): E109085

Libkind, D.; Moliné, M.ín.; Sommaruga, R.; Sampaio, J.é P.; van Broock, M. 2011: Phylogenetic distribution of fungal mycosporines within the Pucciniomycotina (Basidiomycota). Yeast 28(8): 619-627

Weete, J.D.; Abril, M.; Blackwell, M. 2010: Phylogenetic distribution of fungal sterols. Plos one 5(5): E10899

Da Lage, J.-L.; Maczkowiak, F.éd.ér.; Cariou, M.-L. 2011: Phylogenetic distribution of intron positions in alpha-amylase genes of bilateria suggests numerous gains and losses. Plos one 6(5): E19673

Blackburn, M.B.; Martin, P.A.W.; Kuhar, D.; Farrar, R.R.; Gundersen-Rindal, D.E. 2013: Phylogenetic distribution of phenotypic traits in Bacillus thuringiensis determined by multilocus sequence analysis. Plos one 8(6): E66061

Van Hoef, V.; Breugelmans, B.; Spit, J.; Simonet, G.; Zels, S.; Vanden Broeck, J. 2013: Phylogenetic distribution of protease inhibitors of the Kazal-family within the Arthropoda. Peptides 41: 59-65

Jing, R.; Liu, J.; Yu, Z.; Liu, X.; Wang, G. 2014: Phylogenetic distribution of the capsid assembly protein gene (g20) of cyanophages in paddy floodwaters in Northeast China. Plos one 9(2): E88634

Hendry, T.A.; Dunlap, P.V. 2014: Phylogenetic divergence between the obligate luminous symbionts of flashlight fishes demonstrates specificity of bacteria to host genera. Environmental Microbiology Reports 6(4): 331-338

Iannone, L.Javier.; Cabral, D.; Schardl, C.Lewis.; Rossi, Mía.Susana. 2009: Phylogenetic divergence, morphological and physiological differences distinguish a new Neotyphodium endophyte species in the grass Bromus auleticus from South America. Mycologia 101(3): 340-351

Stanich, N.A.; Rothwell, G.W.; Stockey, R.A. 2009: Phylogenetic diversification of Equisetum (Equisetales) as inferred from Lower Cretaceous species of British Columbia, Canada. American Journal of Botany 96(7): 1289-1299

Youssef, N.H.; Ashlock-Savage, K.N.; Elshahed, M.S. 2012: Phylogenetic diversities and community structure of members of the extremely halophilic Archaea (order Halobacteriales) in multiple saline sediment habitats. Applied and Environmental Microbiology 78(5): 1332-1344

Qin, X.-Y.; Yang, K.-L.; Li, J.; Wang, C.-Y.; Shao, C.-L. 2015: Phylogenetic diversity and antibacterial activity of culturable fungi derived from the zoanthid Palythoa haddoni in the South China Sea. Marine Biotechnology 17(1): 99-109

Heindl, H.; Wiese, J.; Thiel, V.; Imhoff, J.F. 2010: Phylogenetic diversity and antimicrobial activities of bryozoan-associated bacteria isolated from Mediterranean and Baltic Sea habitats. Systematic and Applied Microbiology 33(2): 94-104

ElAhwany, A.M.D.; Ghozlan, H.A.; ElSharif, H.A.; Sabry, S.A. 2015: Phylogenetic diversity and antimicrobial activity of marine bacteria associated with the soft coral Sarcophyton glaucum. Journal of Basic Microbiology 55(1): 2-10

Li, M.; Yang, H.; Gu, J.-D. 2009: Phylogenetic diversity and axial distribution of microbes in the intestinal tract of the polychaete Neanthes glandicincta. Microbial Ecology 58(4): 892-902

Yuan, M.; Yu, Y.; Li, H.-R.; Dong, N.; Zhang, X.-H. 2014: Phylogenetic diversity and biological activity of actinobacteria isolated from the Chukchi Shelf marine sediments in the Arctic Ocean. Marine Drugs 12(3): 1281-1297

Pandey, S.; Singh, S.; Yadav, A.N.; Nain, L.; Saxena, A.K. 2013: Phylogenetic diversity and characterization of novel and efficient cellulase producing bacterial isolates from various extreme environments. Bioscience Biotechnology and Biochemistry 77(7): 1474-1480

Peralta, G.; Frost, C.M.; Didham, R.K.; Varsani, A.; Tylianakis, J.M. 2015: Phylogenetic diversity and co-evolutionary signals among trophic levels change across a habitat edge. Journal of Animal Ecology 84(2): 364-372

Bekele, A.Z.; Koike, S.; Kobayashi, Y. 2011: Phylogenetic diversity and dietary association of rumen Treponema revealed using group-specific 16S rRNA gene-based analysis. Fems Microbiology Letters 316(1): 51-60

Wang, G.; Meng, K.; Luo, H.; Wang, Y.; Huang, H.; Shi, P.; Yang, P.; Zhang, Z.; Yao, B. 2012: Phylogenetic diversity and environment-specific distributions of glycosyl hydrolase family 10 xylanases in geographically distant soils. Plos one 7(8): E43480

Bojnik, E.; Boynik, E.; Corbani, M.; Babos, F.; Magyar, A.; Borsodi, A.; Benyhe, S. 2011: Phylogenetic diversity and functional efficacy of the C-terminally expressed heptapeptide unit in the opioid precursor polypeptide proenkephalin a. Neuroscience 178: 56-67

Akerman, N.H.; Butterfield, D.A.; Huber, J.A. 2013: Phylogenetic diversity and functional gene patterns of sulfur-oxidizing subseafloor Epsilonproteobacteria in diffuse hydrothermal vent fluids. Frontiers in Microbiology 4: 185

Liu, Y.; Wang, J.; Ji, J.; Chang, S.; Xue, C.; Ma, J.; Bi, Y.; Xie, Q. 2012: Phylogenetic diversity and genotypic complexity of H1N1 subtype swine influenza viruses isolated in mainland China. Virology Journal 9: 289

Dong, G.; Luo, J.; Zhang, H.; Wang, C.; Duan, M.; Deliberto, T.J.; Nolte, D.L.; Ji, G.; He, H. 2011: Phylogenetic diversity and genotypical complexity of H9N2 influenza a viruses revealed by genomic sequence analysis. Plos one 6(2): E17212

Jacobs, G.B.; Laten, A.; van Rensburg, E.J.; Bodem, J.; Weissbrich, B.; Rethwilm, A.; Preiser, W.; Engelbrecht, S. 2008: Phylogenetic diversity and low level antiretroviral resistance mutations in HIV type 1 treatment-naive patients from Cape Town, South Africa. Aids Research and Human Retroviruses 24(7): 1009-1012

Yang, C.; Zhang, W.; Liu, R.; Li, Q.; Li, B.; Wang, S.; Song, C.; Qiao, C.; Mulchandani, A. 2011: Phylogenetic diversity and metabolic potential of activated sludge microbial communities in full-scale wastewater treatment plants. Environmental Science and Technology 45(17): 7408-7415

Simon, C.; Wiezer, A.; Strittmatter, A.W.; Daniel, R. 2009: Phylogenetic diversity and metabolic potential revealed in a glacier ice metagenome. Applied and Environmental Microbiology 75(23): 7519-7526

Glöckner, J.; Kube, M.; Shrestha, P.Malla.; Weber, M.; Glöckner, F.Oliver.; Reinhardt, R.; Liesack, W. 2010: Phylogenetic diversity and metagenomics of candidate division OP3. Environmental Microbiology 12(5): 1218-1229

Meyer, B.; Kuever, J. 2008: Phylogenetic diversity and spatial distribution of the microbial community associated with the Caribbean deep-water sponge Polymastia cf. corticata by 16S rRNA, aprA, and amoA gene analysis. Microbial Ecology 56(2): 306-321

Shi, L.; Cai, Y.; Yang, H.; Xing, P.; Li, P.; Kong, L.; Kong, F. 2009: Phylogenetic diversity and specificity of bacteria associated with Microcystis aeruginosa and other cyanobacteria. Journal of Environmental Sciences 21(11): 1581-1590

Sarr, P.S.; Yamakawa, T.; Fujimoto, S.; Saeki, Y.; Thao, H.T.B.; Myint, A.K. 2009: Phylogenetic diversity and symbiotic effectiveness of root-nodulating bacteria associated with cowpea in the South-West area of Japan. Microbes and Environments 24(2): 105-112

Risal, C.P.; Djedidi, S.; Dhakal, D.; Ohkama-Ohtsu, N.; Sekimoto, H.; Yokoyama, T. 2012: Phylogenetic diversity and symbiotic functioning in mungbean (Vigna radiata L. Wilczek) bradyrhizobia from contrast agro-ecological regions of Nepal. Systematic and Applied Microbiology 35(1): 45-53

Berlanga, M.; Aas, J.A.; Paster, B.J.; Boumenna, T.; Dewhirst, F.E.; Guerrero, R. 2008: Phylogenetic diversity and temporal variation in the Spirochaeta populations from two Mediterranean microbial mats. International Microbiology: the Official Journal of the Spanish Society for Microbiology 11(4): 267-274

Davies, T.J.; Buckley, L.B. 2011: Phylogenetic diversity as a window into the evolutionary and biogeographic histories of present-day richness gradients for mammals. Philosophical Transactions of the Royal Society of London. Series B Biological Sciences 366(1576): 2414-2425

Hao, Y.'e.; Mou, G.; He, A.; Xi, J.; Yang, F.; Mo, M. 2011: Phylogenetic diversity characteristics of soil bacteria producing nematode-attracting volatiles and identification of their active compounds. Wei Sheng Wu Xue Bao 51(11): 1454-1460

Cadotte, M.W.; Jonathan Davies, T.; Regetz, J.; Kembel, S.W.; Cleland, E.; Oakley, T.H. 2010: Phylogenetic diversity metrics for ecological communities: integrating species richness, abundance and evolutionary history. Ecology Letters 13(1): 96-105

Fontes, M.C.; Martins, C.; Martínez-Murcia, A.J.; Saavedra, M.J. 2012: Phylogenetic diversity of Aeromonas from "alheira," a traditional Portuguese meat product. Foodborne Pathogens and Disease 9(8): 713-718

Hahnke, R.L.; Harder, J. 2013: Phylogenetic diversity of Flavobacteria isolated from the North Sea on solid media. Systematic and Applied Microbiology 36(7): 497-504

Castellá, G.; Cabañes, F.J. 2014: Phylogenetic diversity of Fusarium incarnatum-equiseti species complex isolated from Spanish wheat. Antonie van Leeuwenhoek 106(2): 309-317

Kim, D.H.; Kaashyap, M.; Rathore, A.; Das, R.R.; Parupalli, S.; Upadhyaya, H.D.; Gopalakrishnan, S.; Gaur, P.M.; Singh, S.; Kaur, J.; Yasin, M.; Varshney, R.K. 2014: Phylogenetic diversity of Mesorhizobium in chickpea. Journal of Biosciences 39(3): 513-517

Choi, D.H.; Noh, J.H. 2009: Phylogenetic diversity of Synechococcus strains isolated from the East China Sea and the East Sea. Fems Microbiology Ecology 69(3): 439-448

Butina, T.V.; Belykh, O.I.; Maksimenko, S.Y.; Belikov, S.I. 2010: Phylogenetic diversity of T4-like bacteriophages in Lake Baikal, East Siberia. Fems Microbiology Letters 309(2): 122-129

Chan, O.W.; Bugler-Lacap, D.C.; Biddle, J.F.; Lim, D.S.; McKay, C.P.; Pointing, S.B. 2014: Phylogenetic diversity of a microbialite reef in a cold alkaline freshwater lake. Canadian Journal of Microbiology 60(6): 391-398

Salwan, R.; Gulati, A.; Kasana, R.C. 2010: Phylogenetic diversity of alkaline protease-producing psychrotrophic bacteria from glacier and cold environments of Lahaul and Spiti, India. Journal of Basic Microbiology 50(2): 150-159

Radeva, G.; Kenarova, A.; Bachvarova, V.; Flemming, K.; Popov, I.; Vassilev, D.; Selenska-Pobell, S. 2014: Phylogenetic diversity of archaea and the archaeal ammonia monooxygenase gene in uranium mining-impacted locations in Bulgaria. Archaea 2014: 196140

Singh, S.K.; Verma, P.; Ramaiah, N.; Chandrashekar, A.A.; Shouche, Y.S. 2010: Phylogenetic diversity of archaeal 16S rRNA and ammonia monooxygenase genes from tropical estuarine sediments on the central west coast of India. Research in Microbiology 161(3): 177-186

Schabereiter-Gurtner, C.; Saiz-Jimenez, C.; Piñar, G.; Lubitz, W.; Rölleke, S. 2004: Phylogenetic diversity of bacteria associated with Paleolithic paintings and surrounding rock walls in two Spanish caves (Llonín and la Garma). Fems Microbiology Ecology 47(2): 235-247

Zhang, Y.; Jiao, N.; Sun, Z.; Hu, A.; Zheng, Q. 2011: Phylogenetic diversity of bacterial communities in South China Sea mesoscale cyclonic eddy perturbations. Research in Microbiology 162(3): 320-329

Krett, G.; Vágány, V.ór.; Makk, J.; Jáger, K.; Reskóné, M.ár.N.; Márialigeti, K.ár.; Borsodi, A.K. 2013: Phylogenetic diversity of bacterial communities inhabiting the sediment of Lake Hévíz - a comparison of cultivation and cloning. Acta Microbiologica et Immunologica Hungarica 60(2): 211-235

Xiao, H.; Chen, Y.; Liu, Z.; Huang, K.; Li, W.; Cui, X.; Zhang, L.; Yi, L. 2009: Phylogenetic diversity of cultivable bacteria associated with a sea anemone from coast of the Naozhou island in Zhanjiang, China. Wei Sheng Wu Xue Bao 49(2): 246-250

Wang, T.; Zhao, D.; Tian, S.; You, L.; Wang, S.; Feng, R.; Feng, X.; Zhang, Y.; Cui, X. 2011: Phylogenetic diversity of cultivable bacteria during the brewing process of the luzhou-flavor liquor in Yibin, Sichuan province, China. Wei Sheng Wu Xue Bao 51(10): 1351-1357

Yusuf, K.; Pulat, S.; Turdahun, M.; Hamdun, M.; Osman, G.; Abdurehim, Z.; Rahman, E. 2011: Phylogenetic diversity of culturable endophytic bacteria isolated from the Populus euphratica at the disused ancient Ugan river. Wei Sheng Wu Xue Bao 51(2): 178-188

Li, H.-j.; Peng, J.-j. 2011: Phylogenetic diversity of dissimilatory Fe(III)-reducing bacteria in paddy soil. Ying Yong Sheng Tai Xue Bao 22(10): 2705-2710

Ahn, J.-H.; Jeong, W.-S.; Choi, M.-Y.; Kim, B.-Y.; Song, J.; Weon, H.-Y. 2014: Phylogenetic diversity of dominant bacterial and archaeal communities in plant-microbial fuel cells using rice plants. Journal of Microbiology and Biotechnology 24(12): 1707-1718

Wang, T.; You, L.; Cui, X.; Tian, W.; Huang, N.; Li, X. 2009: Phylogenetic diversity of endophytic endospore-forming bacteria isolated from Cinnamomum longepaniculatum N. Chao ex H. W. Li. Wei Sheng Wu Xue Bao 49(5): 573-579

Rhoden, S.A.; Garcia, A.; Rubin Filho, C.J.; Azevedo, J.L.; Pamphile, J.A. 2012: Phylogenetic diversity of endophytic leaf fungus isolates from the medicinal tree Trichilia elegans (Meliaceae). Genetics and Molecular Research: Gmr 11(3): 2513-2522

Adetutu, E.M.; Thorpe, K.; Bourne, S.; Cao, X.; Shahsavari, E.; Kirby, G.; Ball, A.S. 2011: Phylogenetic diversity of fungal communities in areas accessible and not accessible to tourists in Naracoorte Caves. Mycologia 103(5): 959-968

Mitsumori, M.; Nakagawa, S.; Matsui, H.; Shinkai, T.; Takenaka, A. 2010: Phylogenetic diversity of gene sequences isolated from the rumen as analysed using a self-organizing map (SOM). Journal of Applied Microbiology 109(3): 763-770

O'Donnell, K.; Humber, R.A.; Geiser, D.M.; Kang, S.; Park, B.; Robert, V.A.R.G.; Crous, P.W.; Johnston, P.R.; Aoki, T.; Rooney, A.P.; Rehner, S.A. 2012: Phylogenetic diversity of insecticolous fusaria inferred from multilocus DNA sequence data and their molecular identification via FUSARIUM-ID and Fusarium MLST. Mycologia 104(2): 427-445

García-Maldonado, J.é Q.; Bebout, B.M.; Celis, L.B.; López-Cortés, A. 2012: Phylogenetic diversity of methyl-coenzyme M reductase (mcrA) gene and methanogenesis from trimethylamine in hypersaline environments. International Microbiology: the Official Journal of the Spanish Society for Microbiology 15(1): 33-41

Kobayashi, H.; Endo, K.; Sakata, S.; Mayumi, D.; Kawaguchi, H.; Ikarashi, M.; Miyagawa, Y.; Maeda, H.; Sato, K. 2012: Phylogenetic diversity of microbial communities associated with the crude-oil, large-insoluble-particle and formation-water components of the reservoir fluid from a non-flooded high-temperature petroleum reservoir. Journal of Bioscience and Bioengineering 113(2): 204-210

Jungbluth, S.P.; Lin, H.-T.; Cowen, J.P.; Glazer, B.T.; Rappé, M.S. 2014: Phylogenetic diversity of microorganisms in subseafloor crustal fluids from Holes 1025C and 1026B along the Juan de Fuca Ridge flank. Frontiers in Microbiology 5: 119

Liu, J.; Peng, M.; Li, Y. 2012: Phylogenetic diversity of nitrogen-fixing bacteria and the nifH gene from mangrove rhizosphere soil. Canadian Journal of Microbiology 58(4): 531-539

Tanaka, M.; Nara, K. 2009: Phylogenetic diversity of non-nodulating Rhizobium associated with pine ectomycorrhizae. Fems Microbiology Ecology 69(3): 329-343

Dinnage, R. 2013: Phylogenetic diversity of plants alters the effect of species richness on invertebrate herbivory. Peerj 1: E93

Appunu, C.; Ganesan, G.; Kalita, M.ł; Kaushik, R.; Saranya, B.; Prabavathy, V.R.; Sudha, N. 2011: Phylogenetic diversity of rhizobia associated with horsegram [Macrotyloma uniflorum (Lam.) Verdc.] grown in South India based on glnII, recA and 16S-23S intergenic sequence analyses. Current Microbiology 62(4): 1230-1238

Kouridaki, I.; Polymenakou, P.N.; Tselepides, A.; Mandalakis, M.; Smith, K.L. 2010: Phylogenetic diversity of sediment bacteria from the deep Northeastern Pacific Ocean: a comparison with the deep Eastern Mediterranean Sea. International Microbiology: the Official Journal of the Spanish Society for Microbiology 13(3): 143-150

Chénard, C.; Suttle, C.A. 2008: Phylogenetic diversity of sequences of cyanophage photosynthetic gene psbA in marine and freshwaters. Applied and Environmental Microbiology 74(17): 5317-5324

Nikolaou, E.; Agrafioti, I.; Stumpf, M.; Quinn, J.; Stansfield, I.; Brown, A.J.P. 2009: Phylogenetic diversity of stress signalling pathways in fungi. Bmc Evolutionary Biology 9: 44

Liu, Y.; Lai, Q.; Dong, C.; Sun, F.; Wang, L.; Li, G.; Shao, Z. 2013: Phylogenetic diversity of the Bacillus pumilus group and the marine ecotype revealed by multilocus sequence analysis. Plos one 8(11): E80097

Xin, Y.; Wu, P.; Deng, M.; Zhang, W. 2009: Phylogenetic diversity of the culturable rare actinomycetes in marine sponge Hymeniacidon perlevis by improved isolation media. Wei Sheng Wu Xue Bao 49(7): 859-866

Peng, M.; Xie, Q.; Hu, H.; Hong, K.; Todd, J.D.; Johnston, A.W.B.; Li, Y. 2012: Phylogenetic diversity of the dddP gene for dimethylsulfoniopropionate-dependent dimethyl sulfide synthesis in mangrove soils. Canadian Journal of Microbiology 58(4): 523-530

Timme, R.E.; Pettengill, J.B.; Allard, M.W.; Strain, E.; Barrangou, R.; Wehnes, C.; Van Kessel, J.S.; Karns, J.S.; Musser, S.M.; Brown, E.W. 2013: Phylogenetic diversity of the enteric pathogen Salmonella enterica subsp. enterica inferred from genome-wide reference-free SNP characters. Genome Biology and Evolution 5(11): 2109-2123

Schmidtova, J.; Hallam, S.J.; Baldwin, S.A. 2009: Phylogenetic diversity of transition and anoxic zone bacterial communities within a near-shore anoxic basin: Nitinat Lake. Environmental Microbiology 11(12): 3233-3251

Pildain, M.ía.B.; Visnovsky, S.B.; Barroetaveña, C. 2014: Phylogenetic diversity of true morels (Morchella), the main edible non-timber product from native Patagonian forests of Argentina. Fungal Biology 118(9-10): 755-763

O'Dwyer, J.P.; Kembel, S.W.; Green, J.L. 2012: Phylogenetic diversity theory sheds light on the structure of microbial communities. Plos Computational Biology 8(12): E1002832

Carvalho, M.J.ão.; Martínez-Murcia, A.; Esteves, A.C.; Correia, A.ón.; Saavedra, M.J.é 2012: Phylogenetic diversity, antibiotic resistance and virulence traits of Aeromonas spp. from untreated waters for human consumption. International Journal of Food Microbiology 159(3): 230-239

Erwin, P.M.; Olson, J.B.; Thacker, R.W. 2011: Phylogenetic diversity, host-specificity and community profiling of sponge-associated bacteria in the northern Gulf of Mexico. Plos one 6(11): E26806

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Soza, V.L.; Brunet, J.; Liston, A.; Smith, P.Salles.; Di Stilio, Vónica.S. 2012: Phylogenetic insights into the correlates of dioecy in meadow-rues (Thalictrum, Ranunculaceae). Molecular Phylogenetics and Evolution 63(1): 180-192

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Henquell, C.éc.; Mirand, A.; Richter, J.; Schuffenecker, I.; Böttiger, B.; Diedrich, S.; Terletskaia-Ladwig, E.; Christodoulou, C.; Peigue-Lafeuille, H.él.èn.; Bailly, J.-L. 2013: Phylogenetic patterns of human coxsackievirus B5 arise from population dynamics between two genogroups and reveal evolutionary factors of molecular adaptation and transmission. Journal of Virology 87(22): 12249-12259

Piralla, A.; Baldanti, F.; Gerna, G. 2011: Phylogenetic patterns of human respiratory picornavirus species, including the newly identified group C rhinoviruses, during a 1-year surveillance of a hospitalized patient population in Italy. Journal of Clinical Microbiology 49(1): 373-376

Baldwin, B.G.; Kalisz, S.; Armbruster, W.S. 2011: Phylogenetic perspectives on diversification, biogeography, and floral evolution of Collinsia and Tonella (Plantaginaceae). American Journal of Botany 98(4): 731-753

Yip, C.W.; Hon, C.C.; Shi, M.; Lam, T.T.-Y.; Chow, K.Y.-C.; Zeng, F.; Leung, F.C.-C. 2009: Phylogenetic perspectives on the epidemiology and origins of SARS and SARS-like coronaviruses. Infection Genetics and Evolution: Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases 9(6): 1185-1196

Doyle, J.J. 2011: Phylogenetic perspectives on the origins of nodulation. Molecular Plant-Microbe Interactions: Mpmi 24(11): 1289-1295

Sveinsson, S.; McDill, J.; Wong, G.K.S.; Li, J.; Li, X.; Deyholos, M.K.; Cronk, Q.C.B. 2014: Phylogenetic pinpointing of a paleopolyploidy event within the flax genus (Linum) using transcriptomics. Annals of Botany 113(5): 753-761

Mejía, L.C.; Castlebury, L.A.; Rossman, A.Y.; Sogonov, M.V.; White, J.F. 2008: Phylogenetic placement and taxonomic review of the genus Cryptosporella and its synonyms Ophiovalsa and Winterella (Gnomoniaceae, Diaporthales). Mycological Research 112(Pt 1): 23-35

Burkett, A.M.; Rathburn, A.E.; Pérez, M.E.; Levin, L.A.; Cha, H.; Rouse, G.W. 2015: Phylogenetic placement of Cibicidoides wuellerstorfi (Schwager, 1866) from methane seeps and non-seep habitats on the Pacific margin. Geobiology 13(1): 44-52

Nawrocki, A.M.; Collins, A.G.; Hirano, Y.M.; Schuchert, P.; Cartwright, P. 2013: Phylogenetic placement of Hydra and relationships within Aplanulata (Cnidaria: Hydrozoa). Molecular Phylogenetics and Evolution 67(1): 60-71

Dentinger, B.T.M.; Lodge, D.J.; Munkacsi, A.B.; Desjardin, D.E.; McLaughlin, D.J. 2009: Phylogenetic placement of an unusual coral mushroom challenges the classic hypothesis of strict coevolution in the apterostigma pilosum group ant-fungus mutualism. Evolution; International Journal of Organic Evolution 63(8): 2172-2178

Xu, Z.; Harrington, T.C.; Gleason, M.L.; Batzer, J.C. 2010: Phylogenetic placement of plant pathogenic Sclerotium species among teleomorph genera. Mycologia 102(2): 337-346

Muggia, L.; Gueidan, Cécile.; Grube, M. 2010: Phylogenetic placement of some morphologically unusual members of Verrucariales. Mycologia 102(4): 835-846

Dunthorn, M.; Eppinger, M.; Schwarz, M.V.J.; Schweikert, M.; Boenigk, J.; Katz, L.A.; Stoeck, T. 2009: Phylogenetic placement of the Cyrtolophosididae Stokes, 1888 (Ciliophora; Colpodea) and neotypification of Aristerostoma marinum Kahl, 1931. International Journal of Systematic and Evolutionary Microbiology 59(Part 1): 167-180

Spatafora, J.W.; Owensby, C.A.; Douhan, G.W.; Boehm, E.W.A.; Schoch, C.L. 2012: Phylogenetic placement of the ectomycorrhizal genus Cenococcum in Gloniaceae (Dothideomycetes). Mycologia 104(3): 758-765

Xiang, C.-L.; Gitzendanner, M.A.; Soltis, D.E.; Peng, H.; Lei, L.-G. 2012: Phylogenetic placement of the enigmatic and critically endangered genus Saniculiphyllum (Saxifragaceae) inferred from combined analysis of plastid and nuclear DNA sequences. Molecular Phylogenetics and Evolution 64(2): 357-367

Pinho, D.B.; Junior, J.H.; Nicoli, A.; Junior, B.T.H.; Bragança, C.A.D.; Pereira, O.L. 2012: Phylogenetic placement of the genus Anhellia and the description of A. nectandrae sp. nov. Mycologia 104(6): 1291-1298

Miadlikowska, J.; Richardson, D.; Magain, N.; Ball, B.; Anderson, F.; Cameron, R.; Lendemer, J.; Truong, C.; Lutzoni, F.ço. 2014: Phylogenetic placement, species delimitation, and cyanobiont identity of endangered aquatic Peltigera species (lichen-forming Ascomycota, Lecanoromycetes). American Journal of Botany 101(7): 1141-1156

Ndiribe, C.; Pellissier, L.ïc.; Antonelli, S.; Dubuis, A.; Pottier, J.; Vittoz, P.; Guisan, A.; Salamin, N. 2013: Phylogenetic plant community structure along elevation is lineage specific. Ecology and Evolution 3(15): 4925-4939

Feuerriegel, S.; Köser, C.U.; Niemann, S. 2014: Phylogenetic polymorphisms in antibiotic resistance genes of the Mycobacterium tuberculosis complex. Journal of Antimicrobial ChemoTherapy 69(5): 1205-1210

Hayashi, R.; Chan, B.K.K.; Simon-Blecher, N.; Watanabe, H.; Guy-Haim, T.; Yonezawa, T.; Levy, Y.; Shuto, T.; Achituv, Y. 2013: Phylogenetic position and evolutionary history of the turtle and whale barnacles (Cirripedia: Balanomorpha: Coronuloidea). Molecular Phylogenetics and Evolution 67(1): 9-14

Carpenter, K.J.; Horak, A.; Keeling, P.J. 2010: Phylogenetic position and morphology of spirotrichosomidae (parabasalia): new evidence from Leptospironympha of Cryptocercus punctulatus. Protist 161(1): 122-132

Hosokawa, T.; Kikuchi, Y.; Nikoh, N.; Meng, X.-Y.; Hironaka, M.; Fukatsu, T. 2010: Phylogenetic position and peculiar genetic traits of a midgut bacterial symbiont of the stinkbug Parastrachia japonensis. Applied and Environmental Microbiology 76(13): 4130-4135

Zlotnikov, K.M.; Zlotnikov, A.K.; Kaparullina, E.N.; Doronina, N.V. 2013: Phylogenetic position and phosphate solubilizing activity of the lactic acid bacteria associated with different plants. Mikrobiologiia 82(3): 376-379

Huang, G.-H.; Garretson, T.A.; Cheng, X.-H.; Holztrager, M.S.; Li, S.-J.; Wang, X.; Cheng, X.-W. 2012: Phylogenetic position and replication kinetics of Heliothis virescens ascovirus 3h (HvAV-3h) isolated from Spodoptera exigua. Plos one 7(7): E40225

Barth, J.M.I.; Matschiner, M.; Robertson, B.C. 2013: Phylogenetic position and subspecies divergence of the endangered New Zealand Dotterel (Charadrius obscurus). Plos one 8(10): E78068

Frajman, Bžo.; Carlón, L.; Kosachev, P.; Pedraja, O.Sánchez.; Schneeweiss, G.M.; Schönswetter, P. 2013: Phylogenetic position and taxonomy of the enigmatic Orobanche krylowii (Orobanchaceae), a predominatly Asian species newly found in Albania (SE Europe). Phytotaxa 137(1)

Xie, P.; Tu, T.; Razafimandimbison, S.G.; Zhu, C.; Zhang, D. 2014: Phylogenetic position of Guihaiothamnus (Rubiaceae): its evolutionary and ecological implications. Molecular Phylogenetics and Evolution 78: 375-385

Sharma, V.L.; Singla, M.; Sobti, R.C. 2013: Phylogenetic position of Indian termites (Isoptera: Termitidae) with their respective genera inferred from DNA sequence analysis of the mitochondrial cytochrome oxidase gene subunit i compared to subunit Ii. Molecular and Cellular Biochemistry 2013

Cihoric, N.; Vlaskou Badra, E.; Tsikkinis, A.; Prasad, V.; Kroeze, S.; Igrutinovic, I.; Jeremic, B.; Beck, M.; Zschaeck, S.; Wust, P.; Ghadjar, P. 2018: Clinical trials involving positron emission tomography and prostate cancer: an analysis of the ClinicalTrials.gov database. Radiation Oncology 13(1): 113

Gile, G.H.; Slamovits, C.H. 2012: Phylogenetic position of Lophomonas striata Bütschli (Parabasalia) from the hindgut of the cockroach Periplaneta americana. Protist 163(2): 274-283

Rehm, P.; Meusemann, K.; Borner, J.; Misof, B.; Burmester, T. 2014: Phylogenetic position of Myriapoda revealed by 454 transcriptome sequencing. Molecular Phylogenetics and Evolution 77: 25-33

Vossbrinck, C.R.; Baker, M.D.; Andreadis, T.G. 2010: Phylogenetic position of Octosporea muscaedomesticae (Microsporidia) and its relationship to Octosporea bayeri based on small subunit rDNA analysis. Journal of Invertebrate Pathology 105(3): 366-370

Bartošová, P.; Freeman, M.A.; Yokoyama, H.; Caffara, M.; Fiala, I. 2011: Phylogenetic position of Sphaerospora testicularis and Latyspora scomberomori n. gen. n. sp. (Myxozoa) within the marine urinary clade. Parasitology 138(3): 381-393

Lunardi, M.; Claus, M.P.; Alfieri, A.A.; Fungaro, M.H.P.; Alfieri, A.F. 2010: Phylogenetic position of an uncharacterized Brazilian strain of bovine papillomavirus in the genus Xipapillomavirus based on sequencing of the L1 open reading frame. Genetics and Molecular Biology 33(4): 745-749

Oshima, K.; Chiba, Y.; Igarashi, Y.; Arai, H.; Ishii, M. 2012: Phylogenetic position of aquificales based on the whole genome sequences of six aquificales species. International Journal of Evolutionary Biology 2012: 859264

Mahmood, M.T.; McLenachan, P.A.; Gibb, G.C.; Penny, D. 2014: Phylogenetic position of avian nocturnal and diurnal raptors. Genome Biology and Evolution 6(2): 326-332

Maĭkova, O.O.; Itskovich, V.B.; Semiturkina, N.A.; Kaliuzhnaia, O.V.; Belikov, S.I. 2010: Phylogenetic position of sponges from Chagytaĭ and Tore-Khol' lakes. Genetika 46(12): 1670-1677

Lapolla, J.S.; Schultz, T.R.; Kjer, K.M.; Bischoff, J.F. 2006: Phylogenetic position of the ant genus Acropyga Roger (Hymenoptera: Formicidae) and the evolution of trophophoresy. Insect Systematics and Evolution 37(2): 197-212

Praz, C.J.; Packer, L. 2014: Phylogenetic position of the bee genera Ancyla and Tarsalia (Hymenoptera: Apidae): a remarkable base compositional bias and an early Paleogene geodispersal from North America to the Old World. Molecular phylogenetics and evolution 81: 258-270

Dabert, M.; Dastych, H.; Hohberg, K.; Dabert, J. 2014: Phylogenetic position of the enigmatic clawless eutardigrade genus Apodibius Dastych, 1983 (Tardigrada), based on 18S and 28S rRNA sequence data from its type species A. confusus. Molecular phylogenetics and evolution 70: 70-75

Tsai, S-Fang.; Chen, W-Ting.; Chiang, K-Ping. 2015: Phylogenetic position of the genus Cyrtostrombidium, with a description of Cyrtostrombidium paralongisomum nov. spec. and a redescription of Cyrtostrombidium longisomum Lynn & Gilron, 1993 (Protozoa, Ciliophora) based on live observation, protargol impregnation, and 18S rDNA sequences. Journal of eukaryotic microbiology 62(2): 239-248

Nguyen, T.T.; Aniskin, V.M.; Gerbault-Seureau, M.; Planton, H.; Renard, J.P.; Nguyen, B.X.; Hassanin, A.; Volobouev, V.T. 2008: Phylogenetic position of the saola (Pseudoryx nghetinhensis) inferred from cytogenetic analysis of eleven species of Bovidae. Cytogenetic and Genome Research 122(1): 41-54

Xet-Mull, A.M.; Quesada, T.; Espinoza, A.M. 2004: Phylogenetic position of the yeast-like symbiotes of Tagosodes orizicolus (Homoptera: Delphacidae) based on 18S ribosomal DNA partial sequences. Revista de biologia tropical 52(3): 777-785

Keppen, O.I.; Turova, T.P.; Ivanovskiĭ, R.N.; Lebedeva, N.V.; Baslerov, R.V.; Berg, I.A. 2008: Phylogenetic position of three strains of green sulfur bacteria. Mikrobiologiia 77(2): 282-285

Nozaki, H.; Maruyama, S.; Matsuzaki, M.; Nakada, T.; Kato, S.; Misawa, K. 2009: Phylogenetic positions of Glaucophyta, green plants (Archaeplastida) and Haptophyta (Chromalveolata) as deduced from slowly evolving nuclear genes. Molecular Phylogenetics and Evolution 53(3): 872-880

Suzuki, A.; Endo, K.; Kitano, T. 2014: Phylogenetic positions of RH blood group-related genes in cyclostomes. Gene 543(1): 22-27

Victoria, M.ía.; Colina, R.; Miagostovich, M.P.; Leite, J.é P.; Cristina, J. 2009: Phylogenetic prediction of cis-acting elements: a cre-like sequence in Norovirus genome?. Bmc Research Notes 2: 176

Fagan, W.F.; Pearson, Y.E.; Larsen, E.A.; Lynch, H.J.; Turner, J.B.; Staver, H.; Noble, A.E.; Bewick, S.; Goldberg, E.E. 2013: Phylogenetic prediction of the maximum per capita rate of population growth. PROCEEDINGS. Biological Sciences 280(1763): 20130523

Fox, E.M.; Solomon, K.; Moore, J.E.; Wall, P.G.; Fanning, S.éa. 2014: Phylogenetic profiles of in-house microflora in drains at a food production facility: comparison and biocontrol implications of Listeria-positive and -negative bacterial populations. Applied and Environmental Microbiology 80(11): 3369-3374

Chang, G.S.; Hong, Y.; Ko, K.D.; Bhardwaj, G.; Holmes, E.C.; Patterson, R.L.; van Rossum, D.B. 2008: Phylogenetic profiles reveal evolutionary relationships within the "twilight zone" of sequence similarity. Proceedings of the National Academy of Sciences of the United States of America 105(36): 13474-13479

Ko, K.D.; Bhardwaj, G.; Hong, Y.; Chang, G.S.; Kiselyov, K.; van Rossum, D.B.; Patterson, R.L. 2009: Phylogenetic profiles reveal structural/functional determinants of TRPC3 signal-sensing antennae. Communicative and Integrative Biology 2(2): 133-137

Date, S.V.; Peregrín-Alvarez, Jé.M. 2008: Phylogenetic profiling. Methods in Molecular Biology 453: 201-216

Gupta, A.K.; Rangrez, A.Y.; Verma, P.; Chatterji, A.; Shouche, Y.S. 2009: Phylogenetic profiling of bacterial community from two intimately located sites in Balramgari, North-East coast of India. Indian Journal of Microbiology 49(2): 169-187

De Sousa, F.; Bertrand, Y.J.K.; Nylinder, S.; Oxelman, B.; Eriksson, J.S.; Pfeil, B.E. 2014: Phylogenetic properties of 50 nuclear loci in Medicago (Leguminosae) generated using multiplexed sequence capture and next-generation sequencing. Plos one 9(10): E109704

Pompei, S.; Loreto, V.; Tria, F. 2012: Phylogenetic properties of RNA viruses. Plos one 7(9): E44849

Mooi, R.; Kroh, A.; Srivastava, D.K. 2014: Phylogenetic re-evaluation of fossil and extant micro-echinoids with revision of Tridium, Cyamidia, and Lenicyamidia (Echinoidea: Clypeasteroida). Zootaxa 3857(4): 501-526

Huang, D-Qing.; Yang, J-Tian.; Zhou, C-Jing.; Zhou, S-Dong.; He, X-Jin. 2014: Phylogenetic reappraisal of Allium subgenus Cyathophora (Amaryllidaceae) and related taxa, with a proposal of two new sections. Journal of Plant Research 127(2): 275-286

Han, J.-G.; Hosoya, T.; Sung, G.-H.; Shin, H.-D. 2014: Phylogenetic reassessment of Hyaloscyphaceae sensu lato (Helotiales, Leotiomycetes) based on multigene analyses. Fungal Biology 118(2): 150-167

Crous, P.W.; Wingfield, M.J.; Mansilla, J.P.; Alfenas, A.C.; Groenewald, J.Z. 2006: Phylogenetic reassessment of Mycosphaerella spp. and their anamorphs occurring on Eucalyptus. Ii. Studies in Mycology 55: 99-131

Yue, F.; Zhang, M.; Tang, J. 2008: Phylogenetic reconstruction from transpositions. Bmc Genomics 9(Suppl 2): S15

Biswal, D.K.; Debnath, M.; Kumar, S.; Tandon, P. 2012: Phylogenetic reconstruction in the order Nymphaeales: ITS2 secondary structure analysis and in silico testing of maturase k (matK) as a potential marker for DNA bar coding. Bmc Bioinformatics 13(Suppl 17): S26

De Bruyn, A.; Martin, D.P.; Lefeuvre, P. 2014: Phylogenetic reconstruction methods: an overview. Methods in Molecular Biology 1115: 257-277

Opie, C.; Shultz, S.; Atkinson, Q.D.; Currie, T.; Mace, R. 2014: Phylogenetic reconstruction of Bantu kinship challenges Main Sequence Theory of human social evolution. Proceedings of the National Academy of Sciences of the United States of America 111(49): 17414-17419

GokulRaj, K.; Sundaresan, N.; Ganeshan, E.J.; Rajapriya, P.; Muthumary, J.; Sridhar, J.; Pandi, M. 2014: Phylogenetic reconstruction of endophytic fungal isolates using internal transcribed spacer 2 (ITS2) region. Bioinformation 10(6): 320-328

Rao, C.; Benhabib, H.; Ensminger, A.W. 2013: Phylogenetic reconstruction of the Legionella pneumophila Philadelphia-1 laboratory strains through comparative genomics. Plos one 8(5): E64129

Brown, A.E.; Gifford, R.J.; Clewley, J.P.; Kucherer, C.; Masquelier, B.; Porter, K.; Balotta, C.; Back, N.K.T.; Jorgensen, L.Bruun.; de Mendoza, C.; Bhaskaran, K.; Gill, O.Noel.; Johnson, A.M.; Pillay, D.; Del Amo, J.; Meyer, L.; Bucher, H.; Chene, G.; Pillay, D.; Prins, M.; Rosinska, M.; Sabin, C.; Touloumi, G.; Porter, K.; Lodi, S.; Walker, S.; Babiker, A.; Darbyshire, J.; Bucher, H.; de Luca, A.; Fisher, M.; Muga, R.; Kaldor, J.; Kelleher, T.; Ramacciotti, T.; Gelgor, L.; Cooper, D.; Smith, D.; Gill, J.; Jorgensen, L.Bruun.; Nielsen, C.; Pedersen, C 2009: Phylogenetic reconstruction of transmission events from individuals with acute HIV infection: toward more-rigorous epidemiological definitions. Journal of Infectious Diseases 199(3): 427-431

Prasad, P.K.; Tandon, V.; Biswal, D.K.; Goswami, L.M.; Chatterjee, A. 2009: Phylogenetic reconstruction using secondary structures and sequence motifs of ITS2 rDNA of Paragonimus westermani (Kerbert, 1878) Braun, 1899 (Digenea: Paragonimidae) and related species. Bmc Genomics 10(Suppl 3): S25

Krüger, M.; Krüger, C.; Walker, C.; Stockinger, H.; Schüssler, A. 2012: Phylogenetic reference data for systematics and phylotaxonomy of arbuscular mycorrhizal fungi from phylum to species level. New phytologist 193(4): 970-984

Godoy, O.; Kraft, N.J.B.; Levine, J.M. 2014: Phylogenetic relatedness and the determinants of competitive outcomes. Ecology Letters 17(7): 836-844

Verdú, M.; Gómez-Aparicio, L.; Valiente-Banuet, A. 2012: Phylogenetic relatedness as a tool in restoration ecology: a meta-analysis. PROCEEDINGS. Biological Sciences 279(1734): 1761-1767

Wertheim, J.O.; Scheffler, K.; Choi, J.Y.; Smith, D.M.; Kosakovsky Pond, S.L. 2013: Phylogenetic relatedness of HIV-1 donor and recipient populations. Journal of Infectious Diseases 207(7): 1181-1182

Novitsky, V.; Bussmann, H.; Logan, A.; Moyo, S.; van Widenfelt, E.; Okui, L.; Mmalane, M.; Baca, J.; Buck, L.; Phillips, E.; Tim, D.; McLane, M.F.; Lei, Q.; Wang, R.; Makhema, J.; Lockman, S.; DeGruttola, V.; Essex, M. 2013: Phylogenetic relatedness of circulating HIV-1C variants in Mochudi, Botswana. Plos one 8(12): E80589

Peay, K.G.; Belisle, M.; Fukami, T. 2012: Phylogenetic relatedness predicts priority effects in nectar yeast communities. PROCEEDINGS. Biological Sciences 279(1729): 749-758

Li, T.; Gao, J.-j.; Lu, J.-m.; Ji, X.-l.; Chen, H.-w. 2013: Phylogenetic relationship among East Asian species of the Stegana genus group (Diptera, Drosophilidae). Molecular Phylogenetics and Evolution 66(1): 412-416

Lv, H.-J.; Huang, Y. 2012: Phylogenetic relationship among some groups of orthopteran based on complete sequences of the mitochondrial COi gene. Dong Wu Xue Yan Jiu 33(3): 319-328

Sati, J.; Sah, S.; Pandey, H.; Ali, S.; Sahoo, P.K.; Pande, V.; Baratz, A. 2013: Phylogenetic relationship and molecular identification of five Indian Mahseer species using COIsequence. Journal of Environmental Biology 34(5): 933-939

Zimmermann, T.; Bocksberger, Gëlle.; Brüggemann, W.; Berberich, T. 2013: Phylogenetic relationship and molecular taxonomy of African grasses of the genus Panicum inferred from four chloroplast DNA-barcodes and nuclear gene sequences. Journal of Plant Research 126(3): 363-371

Ota, Y.; Yamanaka, T.; Murata, H.; Neda, H.; Ohta, A.; Kawai, M.; Yamada, A.; Konno, M.; Tanaka, C. 2012: Phylogenetic relationship and species delimitation of matsutake and allied species based on multilocus phylogeny and haplotype analyses. Mycologia 104(6): 1369-1380

Olson, A.B.; Kent, H.; Sibley, C.D.; Grinwis, M.E.; Mabon, P.; Ouellette, C.; Tyson, S.; Graham, M.; Tyler, S.D.; Van Domselaar, G.; Surette, M.G.; Corbett, C.R. 2013: Phylogenetic relationship and virulence inference of Streptococcus Anginosus Group: curated annotation and whole-genome comparative analysis support distinct species designation. Bmc Genomics 14: 895

Dubey, S.C.; Priyanka, K.; Singh, V. 2014: Phylogenetic relationship between different race representative populations of Fusarium oxysporum f. sp. ciceris in respect of translation elongation factor-1α, β-tubulin, and internal transcribed spacer region genes. Archives of Microbiology 196(6): 445-452

Haklová, B.; Majláthová, V.; Majláth, I.; Harris, D.J.; Petrilla, V.; Litschka-Koen, T.; Oros, M.; Peťko, B. 2014: Phylogenetic relationship of Hepatozoon blood parasites found in snakes from Africa, America and Asia. Parasitology 141(3): 389-398

Douanla-Meli, C.; Langer, E. 2008: Phylogenetic relationship of Marasmius mbalmayoensis sp. nov. to the tropical African Marasmius bekolacongoli complex based on nuc-LSU rDNA sequences. Mycologia 100(3): 445-454

Iiyama, K.; Otao, M.; Mori, K.; Mon, H.; Lee, J.Man.; Kusakabe, T.; Tashiro, K.; Asano, S-Ichiro.; Yasunaga-Aoki, C. 2014: Phylogenetic relationship of Paenibacillus species based on putative replication origin regions and analysis of an yheCD-like sequence found in this region. Bioscience Biotechnology and Biochemistry 78(5): 891-897

Elandaloussi, L.; Carrasco, N.èl.; Furones, D.; Roque, A. 2009: Phylogenetic relationship of Perkinsus olseni from the Ebro Delta, Spain, to other Perkinsus species, based on ribosomal DNA sequences. Diseases of Aquatic Organisms 86(2): 135-142

Mostowfizadeh-Ghalamfarsa, R.; Panabieres, F.; Banihashemi, Z.; Cooke, D.E.L. 2010: Phylogenetic relationship of Phytophthora cryptogea Pethybr. and Laff and P. drechsleri Tucker. Fungal Biology 114(4): 325-339

Huang, Z.; Ke, D. 2015: Phylogenetic relationship of Pucrasia (Aves: Galliformes) based on complete mitochondrial genome sequences. Mitochondrial Dna 26(6): 949-950

Tajbakhsh, M.; Nayer, B.N.; Motavaze, K.; Kharaziha, P.; Chiani, M.; Zali, M.R.; Klena, J.D. 2011: Phylogenetic relationship of Salmonella enterica strains in Tehran, Iran, using 16S rRNA and gyrB gene sequences. Journal of Infection in Developing Countries 5(6): 465-472

Özdil, F.; İlhan, F. 2012: Phylogenetic relationship of Turkish Apis mellifera subspecies based on sequencing of mitochondrial cytochrome C oxidase i region. Genetics and Molecular Research: Gmr 11(2): 1130-1141

Wang, K.; Gao, L.; Wang, S.; Zhang, Y.; Li, X.; Zhang, M.; Xie, Z.; Yan, Y.; Belgard, M.; Ma, W. 2011: Phylogenetic relationship of a new class of LMW-GS genes in the M genome of Aegilops comosa. TAG. Theoretical and Applied Genetics. Theoretische und Angewandte Genetik 122(7): 1411-1425

Alfonso, H.L.; Amarilla, A.A.; Gonçalves, P.F.; Barros, M.T.; de Almeida, F.T.; Silva, T.R.; da Silva, E.V.; Nunes, M.T.; Vasconcelos, P.F.C.; Vieira, D.S.; Batista, W.C.; Bobadilla, M.L.; Vazquez, C.; Moran, M.; Figueiredo, L.T.M.; Aquino, V.H. 2012: Phylogenetic relationship of dengue virus type 3 isolated in Brazil and Paraguay and global evolutionary divergence dynamics. Virology Journal 9: 124

Tank, M.; Thiel, V.; Imhoff, J.F. 2009: Phylogenetic relationship of phototrophic purple sulfur bacteria according to pufL and pufM genes. International Microbiology: the Official Journal of the Spanish Society for Microbiology 12(3): 175-185

García-Sánchez, A.; Morales-Erasto, V.; Talavera-Rojas, M.; Robles-González, F.; Allen, M.S.; Blackall, P.J.; Soriano-Vargas, E. 2014: Phylogenetic relationship of serovar C-1 isolates of Avibacterium paragallinarum. Avian Diseases 58(1): 143-146

Tan, Q.; Yan, X.-F.; Wen, J.-B.; Li, Z.-Y. 2012: Phylogenetic relationship of seven Dendrolimus (Lepidoptera: Lasiocampidae) species based on the ultrastructure of male moths' antennae and antennal sensilla. Microscopy Research and Technique 75(12): 1700-1710

Liu, S.-Q.; Zhang, J.-B.; Tang, Q.-Y.; Liu, H.-Z. 2010: Phylogenetic relationships among Cobitoidea based on mitochondrial ND4 and ND5 gene sequences. Dong Wu Xue Yan Jiu 31(3): 221-229

Reveillaud, J.; van Soest, R.; Derycke, S.; Picton, B.; Rigaux, A.; Vanreusel, A. 2011: Phylogenetic relationships among NE Atlantic Plocamionida Topsent (1927) (Porifera, Poecilosclerida): under-estimated diversity in reef ecosystems. Plos one 6(2): E16533

Malyarchuk, B.; Derenko, M.; Mikhailova, E.; Denisova, G. 2014: Phylogenetic relationships among Neoechinorhynchus species (Acanthocephala: Neoechinorhynchidae) from North-East Asia based on molecular data. Parasitology International 63(1): 100-107

Ruiz-García, M.; Randi, E.; Martínez-Agüero, M.ía.; Alvarez, D. 2007: Phylogenetic relationships among Neotropical deer genera (Artiodactyla: Cervidae) by means of DNAmt sequences and microsatellite markers. Revista de Biologia Tropical 55(2): 723-741

Lü, Z.M.; Cui, W.T.; Liu, L.Q.; Li, H.M.; Wu, C.W. 2013: Phylogenetic relationships among Octopodidae species in coastal waters of China inferred from two mitochondrial DNA gene sequences. Genetics and Molecular Research: Gmr 12(3): 3755-3765

Cui, A.-M.; Huang, Y. 2012: Phylogenetic relationships among Orthoptera insect groups based on complete sequences of 16S ribosomal RNA. Yi Chuan 34(5): 597-608

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Tokiwa, T.; Harunari, T.; Tanikawa, T.; Komatsu, N.; Koizumi, N.; Tung, K.-C.; Suzuki, J.; Kadosaka, T.; Takada, N.; Kumagai, T.; Akao, N.; Ohta, N. 2012: Phylogenetic relationships of rat lungworm, Angiostrongylus cantonensis, isolated from different geographical regions revealed widespread multiple lineages. Parasitology International 61(3): 431-436

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Apalikova, O.V.; Podlesnych, A.V.; Kukhlevskiĭ, A.D.; Gokhua, S.; Brykov, V.A. 2011: Phylogenetic relationships of silver crucian carp Carassius auratus gibelio, C. auratus cuvieri, crucian carp C. carassius, and common carp Cyprinus carpio as inferred from mitochondrial DNA variation. Genetika 47(3): 368-378

Podlesnykh, A.V.; Apalikova, O.V.; Brykov, V.A. 2012: Phylogenetic relationships of silver crucian carp in Carassius auratus complex based on mtDNA analysis. Genetika 48(12): 1389-1400

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Georgescu, S.E.; Manea, M.A.; Dudu, A.; Costache, M. 2011: Phylogenetic relationships of the Hucul horse from Romania inferred from mitochondrial D-loop variation. Genetics and Molecular Research: Gmr 10(4): 4104-4113

Ang, K.C.; Leow, J.W.H.; Yeap, W.K.; Hood, S.; Mahani, M.C.; Md-Zain, B.M. 2011: Phylogenetic relationships of the Orang Asli and Iban of Malaysia based on maternal markers. Genetics and Molecular Research: Gmr 10(2): 640-649

Campos, R.; Botto-Mahan, C.; Coronado, X.; Catala, S.S.; Solari, A. 2013: Phylogenetic relationships of the Spinolai complex and other Triatomini based on mitochondrial DNA sequences (Hemiptera: Reduviidae). Vector Borne and Zoonotic Diseases 13(1): 73-76

Shazib, S.U.A.; Vd'ačný, P.; Kim, J.H.; Jang, S.W.; Shin, M.K. 2014: Phylogenetic relationships of the ciliate class Heterotrichea (Protista, Ciliophora, Postciliodesmatophora) inferred from multiple molecular markers and multifaceted analysis strategy. Molecular Phylogenetics and Evolution 78: 118-135

Reyes-Velasco, J.; Meik, J.M.; Smith, E.N.; Castoe, T.A. 2013: Phylogenetic relationships of the enigmatic longtailed rattlesnakes (Crotalus ericsmithi, C. lannomi, and C. stejnegeri). Molecular Phylogenetics and Evolution 69(3): 524-534

Wetzer, R.; Pérez-Losada, M.; Bruce, N.L. 2013: Phylogenetic relationships of the family Sphaeromatidae Latreille, 1825 (Crustacea: Peracarida: Isopoda) within Sphaeromatidea based on 18S-rDNA molecular data. Zootaxa 3599: 161-177

Chen, Y.-J.; Lin, C.-Y.; Cheng, S.-S.; Chang, S.-T. 2011: Phylogenetic relationships of the genus Chamaecyparis inferred from leaf essential oil. Chemistry and Biodiversity 8(6): 1083-1097

Carrillo-Ruiz, H.; Morón, M.A. 2011: Phylogenetic relationships of the genus Hoplia Illiger (Scarabaeidae: Hopliinae). Neotropical Entomology 40(2): 217-221

Georgescu, S.E.; Manea, M.A.; Dudu, A.; Costache, M. 2012: Phylogenetic relationships of the mangalitsa Swine breed inferred from mitochondrial DNA variation. International Journal of Molecular Sciences 13(7): 8467-8481

Redmond, N.E.; Raleigh, J.; van Soest, R.W.M.; Kelly, M.; Travers, S.A.A.; Bradshaw, B.; Vartia, S.; Stephens, K.M.; McCormack, G.P. 2011: Phylogenetic relationships of the marine Haplosclerida (Phylum Porifera) employing ribosomal (28S rRNA) and mitochondrial (cox1, nad1) gene sequence data. Plos one 6(9): E24344

Nantarat, N.; Tongkerd, P.; Sutcharit, C.; Wade, C.M.; Naggs, F.; Panha, S. 2014: Phylogenetic relationships of the operculate land snail genus Cyclophorus Montfort, 1810 in Thailand. Molecular Phylogenetics and Evolution 70: 99-111

López-Arbarello, A.; Stockar, R.; Bürgin, T. 2014: Phylogenetic relationships of the triassic archaeosemionotus deecke (halecomorphi, ionoscopiformes) from the 'perledo fauna'. Plos one 9(10): E108665

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Yamada, S.; Yoshida, A.; Yoshida, K.; Kuraishi, T.; Hattori, S.; Kai, C.; Nagai, Y.; Sakoda, T.; Tatara, M.; Abe, S.; Fukumoto, S.-i. 2012: Phylogenetic relationships of three species within the family Heligmonellidae (Nematoda; Heligmosomoidea) from Japanese rodents and a lagomorph based on the sequences of ribosomal DNA internal transcribed spacers, ITS-1 and ITS-2. Japanese Journal of Veterinary Research 60(1): 15-21

Ober, K.A.; Maddison, D.R. 2008: Phylogenetic relationships of tribes within Harpalinae (Coleoptera: Carabidae) as inferred from 28S ribosomal DNA and the wingless gene. Journal of Insect Science 8: 63

Kim, M.I.; Wan, X.; Kim, M.J.; Jeong, H.C.; Ahn, N.-H.; Kim, K.-G.; Han, Y.S.; Kim, I. 2010: Phylogenetic relationships of true butterflies (Lepidoptera: Papilionoidea) inferred from COI, 16S rRNA and EF-1α sequences. Molecules and Cells 30(5): 409-425

Votýpka, J.; Klepetková, H.; Jirků, M.; Kment, P.; Lukeš, J. 2012: Phylogenetic relationships of trypanosomatids parasitising true bugs (Insecta: Heteroptera) in sub-Saharan Africa. International Journal for Parasitology 42(5): 489-500

Christensen, H.; Blackall, P.J.; Bisgaard, M. 2009: Phylogenetic relationships of unclassified, satellitic Pasteurellaceae obtained from different species of birds as demonstrated by 16S rRNA gene sequence comparison. Research in Microbiology 160(5): 315-321

Lopez-Osorio, F.; Pickett, K.M.; Carpenter, J.M.; Ballif, B.A.; Agnarsson, I. 2014: Phylogenetic relationships of yellowjackets inferred from nine loci (Hymenoptera: Vespidae, Vespinae, Vespula and Dolichovespula). Molecular Phylogenetics and Evolution 73: 190-201

Howard, M.D.A.; Smith, G.J.; Kudela, R.M. 2009: Phylogenetic relationships of yessotoxin-producing dinoflagellates, based on the large subunit and internal transcribed spacer ribosomal DNA domains. Applied and Environmental Microbiology 75(1): 54-63

Machado, T.ís.; Silva, V.íc.X.; Silva, M.J.é d.J. 2014: Phylogenetic relationships within Bothrops neuwiedi group (Serpentes, Squamata): geographically highly-structured lineages, evidence of introgressive hybridization and Neogene/Quaternary diversification. Molecular Phylogenetics and Evolution 71: 1-14

Torres, D.C.; Lima, J.ão.P.M.S.; Fernandes, A.ân.G.; Nunes, E.P.; Grangeiro, T.B. 2011: Phylogenetic relationships within Chamaecrista sect. Xerocalyx (Leguminosae, Caesalpinioideae) inferred from the cpDNA trnE-trnT intergenic spacer and nrDNA ITS sequences. Genetics and Molecular Biology 34(2): 244-251

Górniak, M.; Paun, O.; Chase, M.W. 2010: Phylogenetic relationships within Orchidaceae based on a low-copy nuclear coding gene, Xdh: Congruence with organellar and nuclear ribosomal DNA results. Molecular Phylogenetics and Evolution 56(2): 784-795

De la Haba, R.R.; Arahal, D.R.; Márquez, M.C.; Ventosa, A. 2010: Phylogenetic relationships within the family Halomonadaceae based on comparative 23S and 16S rRNA gene sequence analysis. International Journal of Systematic and Evolutionary Microbiology 60(Part 4): 737-748

Hultgren, K.M.; Hurt, C.; Anker, A. 2014: Phylogenetic relationships within the snapping shrimp genus Synalpheus (Decapoda: Alpheidae). Molecular Phylogenetics and Evolution 77: 116-125

Honda, M.; Kurita, T.; Toda, M.; Ota, H. 2014: Phylogenetic relationships, genetic divergence, historical biogeography and conservation of an endangered gecko, Goniurosaurus kuroiwae (Squamata: Eublepharidae), from the Central Ryukyus, Japan. Zoological Science 31(5): 309-320

Hosseinzadeh, M.R.; Shams-Bakhsh, M.; Osaloo, S.K.; Brown, J.K. 2014: Phylogenetic relationships, recombination analysis, and genetic variability among diverse variants of tomato yellow leaf curl virus in Iran and the Arabian Peninsula: further support for a TYLCV center of diversity. Archives of Virology 159(3): 485-497

Naka, F.; Strober, B.; Shahriari, M. 2017: Clinical trials: Kids are not just little people. Clinics in Dermatology 35(6): 583-593

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Granevitze, Z.; David, L.; Twito, T.; Weigend, S.; Feldman, M.; Hillel, J. 2014: Phylogenetic resolution power of microsatellites and various single-nucleotide polymorphism types assessed in 10 divergent chicken populations. Animal Genetics 45(1): 87-95

Senior, J.K.; Schweitzer, J.A.; O'Reilly-Wapstra, J.; Chapman, S.K.; Steane, D.; Langley, A.; Bailey, J.K. 2013: Phylogenetic responses of forest trees to global change. Plos one 8(4): E60088

Yung, P.Yi.; Burke, C.; Lewis, M.; Egan, S.; Kjelleberg, S.; Thomas, T. 2009: Phylogenetic screening of a bacterial, metagenomic library using homing endonuclease restriction and marker insertion. Nucleic Acids Research 37(21): E144

Sundberg, K.; Clement, M.; Snell, Q.; Ventura, D.; Whiting, M.; Crandall, K. 2012: Phylogenetic search through partial tree mixing. Bmc Bioinformatics 13(Suppl 13): S8

Akshay, S.; Bertea, M.; Hobbie, S.N.; Oettinghaus, B.ör.; Shcherbakov, D.; Böttger, E.C.; Akbergenov, R. 2011: Phylogenetic sequence variations in bacterial rRNA affect species-specific susceptibility to drugs targeting protein synthesis. Antimicrobial Agents and ChemoTherapy 55(9): 4096-4102

Boffelli, D. 2008: Phylogenetic shadowing: sequence comparisons of multiple primate species. Methods in Molecular Biology 453: 217-231

Straub, S.C.K.; Moore, M.J.; Soltis, P.S.; Soltis, D.E.; Liston, A.; Livshultz, T. 2014: Phylogenetic signal detection from an ancient rapid radiation: Effects of noise reduction, long-branch attraction, and model selection in crown clade Apocynaceae. Molecular Phylogenetics and Evolution 80: 169-185

Hilu, K.W.; Black, C.; Diouf, D.; Burleigh, J.G. 2008: Phylogenetic signal in matK vs. trnK: a case study in early diverging eudicots (angiosperms). Molecular Phylogenetics and Evolution 48(3): 1120-1130

Daly, M.; Gusmão, L.C.; Reft, A.J.; Rodríguez, E.ía. 2010: Phylogenetic signal in mitochondrial and nuclear markers in sea anemones (Cnidaria, Actiniaria). Integrative and Comparative Biology 50(3): 371-388

Naisbit, R.E.; Kehrli, P.; Rohr, R.P.; Bersier, L.-F.él. 2011: Phylogenetic signal in predator-prey body-size relationships. Ecology 92(12): 2183-2189

Elias, M.F.; Torres, R.V.; Davey, A. 2018: Clinical Trials of Blood Pressure Lowering and Antihypertensive Medication: Is Cognitive Measurement State-of-the-Art?. American Journal of Hypertension 31(6): 631-642

Easson, C.G.; Thacker, R.W. 2014: Phylogenetic signal in the community structure of host-specific microbiomes of tropical marine sponges. Frontiers in Microbiology 5: 532

Rojas, D.; Mancina, C.A.; Flores-Martínez, J.J.; Navarro, L. 2013: Phylogenetic signal, feeding behaviour and brain volume in Neotropical bats. Journal of Evolutionary Biology 26(9): 1925-1933

Carew, M.E.; Miller, A.D.; Hoffmann, A.A. 2011: Phylogenetic signals and ecotoxicological responses: potential implications for aquatic biomonitoring. Ecotoxicology 20(3): 595-606

Brożek, J. 2014: Phylogenetic signals from Nepomorpha (Insecta: Hemiptera: Heteroptera) mouthparts: stylets bundle, sense organs, and labial segments. Thescientificworldjournal 2014: 237854

Pósfai, M.ál.; Lefèvre, C.T.; Trubitsyn, D.; Bazylinski, D.A.; Frankel, R.B. 2013: Phylogenetic significance of composition and crystal morphology of magnetosome minerals. Frontiers in Microbiology 4: 344

Edwards, I.P.; Zak, D.R. 2010: Phylogenetic similarity and structure of Agaricomycotina communities across a forested landscape. Molecular Ecology 19(7): 1469-1482

Huang, W.; Nevins, J.R.; Ohler, U. 2007: Phylogenetic simulation of promoter evolution: estimation and modeling of binding site turnover events and assessment of their impact on alignment tools. Genome Biology 8(10): R225

Jargeat, P.; Martos, F.; Carriconde, F.; Gryta, H.é; Moreau, P.-A.; Gardes, M. 2010: Phylogenetic species delimitation in ectomycorrhizal fungi and implications for barcoding: the case of the Tricholoma scalpturatum complex (Basidiomycota). Molecular Ecology 19(23): 5216-5230

Robins, J.H.; Tintinger, V.; Aplin, K.P.; Hingston, M.; Matisoo-Smith, E.; Penny, D.; Lavery, S.D. 2014: Phylogenetic species identification in Rattus highlights rapid radiation and morphological similarity of New Guinean species. PloS one 9(5): e98002

Cunha, H.ée.A.; Moraes, L.C.; Medeiros, B.V.; Lailson-Brito, J.é; da Silva, V.M.F.; Solé-Cava, A.M.; Schrago, C.G. 2011: Phylogenetic status and timescale for the diversification of Steno and Sotalia dolphins. Plos one 6(12): E28297

Feng, X.; Wei, C.; Adam, R.D.; Li, Z.; Lu, S. 2010: Phylogenetic status of Pneumocystis from corticosteroid-treated gerbils. Science China. Life Sciences 53(10): 1239-1246

Kanzaki, N.; Tanaka, R.; Ikeda, H.; Taki, H.; Sugiura, S.; Matsumoto, K. 2013: Phylogenetic status of insect parasitism in the subfamily Entaphelenchinae Nickle with description of Peraphelenchus orientalis n. sp. (Tylenchomorpha: Aphelenchoididae). Journal of Parasitology 99(4): 639-649