EurekaMag.com logo
+ Site Statistics
References:
53,517,315
Abstracts:
29,339,501
+ Search Articles
+ Subscribe to Site Feeds
EurekaMag Most Shared ContentMost Shared
EurekaMag PDF Full Text ContentPDF Full Text
+ PDF Full Text
Request PDF Full TextRequest PDF Full Text
+ Follow Us
Follow on FacebookFollow on Facebook
Follow on TwitterFollow on Twitter
Follow on Google+Follow on Google+
Follow on LinkedInFollow on LinkedIn

+ Translate

RPF: a quality assessment tool for protein NMR structures



RPF: a quality assessment tool for protein NMR structures



Nucleic Acids Research 40(Web Server Issue): W542-W546



We describe the RPF web server, a quality assessment tool for protein NMR structures. The RPF server measures the 'goodness-of-fit' of the 3D structure with NMR chemical shift and unassigned NOESY data, and calculates a discrimination power (DP) score, which estimates the differences between the fits of the query structures and random coil structures to these experimental data. The DP-score is an accuracy predictor of the query structure. The RPF server also maps local structure quality measures onto the 3D structure using an online molecular viewer, and onto the NMR spectra, allowing refinement of the structure and/or NOESY peak list data. The RPF server is available at: http://nmr.cabm.rutgers.edu/rpf.

(PDF same-day service: $19.90)

Accession: 055338578

Download citation: RISBibTeXText

PMID: 22570414

DOI: 10.1093/nar/gks373



Related references

Bacterial community structures as a diagnostic tool for watershed quality assessment. Research in Microbiology 166(1): 38-44, 2015

Assessment of study quality for systematic reviews: a comparison of the Cochrane Collaboration Risk of Bias Tool and the Effective Public Health Practice Project Quality Assessment Tool: methodological research. Journal of Evaluation in Clinical Practice 18(1): 12-18, 2012

Developing a tool to assess quality of stroke care across European populations: the EROS Quality Assessment Tool. Stroke 42(5): 1207-1211, 2011

Quality assessment of protein NMR structures. Current Opinion in Structural Biology 23(5): 715-724, 2014

GenePainter: a fast tool for aligning gene structures of eukaryotic protein families, visualizing the alignments and mapping gene structures onto protein structures. Bmc Bioinformatics 14(): 77-77, 2013

Protein extraction and two-dimensional gel electrophoresis of proteins in the marine mussel Mytilus galloprovincialis: an important tool for protein expression studies, food quality and safety assessment. Journal of the Science of Food and Agriculture 93(7): 1779-1787, 2013

Quality assessment of protein model-structures using evolutionary conservation. Bioinformatics 26(10): 1299-1307, 2010

FunFOLDQA: a quality assessment tool for protein-ligand binding site residue predictions. Plos One 7(5): E38219-E38219, 2012

Quality assessment of protein model-structures based on structural and functional similarities. Bmc Bioinformatics 13(): 242-242, 2013

AUREMOL-RFAC-3D, combination of R-factors and their use for automated quality assessment of protein solution structures. Journal of Biomolecular Nmr 37(1): 15-30, 2006

Development of the anatomical quality assessment (AQUA) tool for the quality assessment of anatomical studies included in meta-analyses and systematic reviews. Clinical Anatomy 30(1): 6-13, 2016

The elder-friendly emergency department assessment tool: development of a quality assessment tool for emergency department-based geriatric care. Journal of the American Geriatrics Society 60(8): 1534-1539, 2012

Searching for a simple assessment tool capable of estimating quality of life in palliative care clinical practice: is a feeling of well-being a good candidate tool as a single item?. Journal of Palliative Medicine 14(12): 1281-1282, 2012

Quality assessment program in primary care clinics: a tool for quality improvement. International Journal for Quality in Health Care 16(2): 175-180, 2004

Surgeon performance index: tool for assessment of individual surgical quality in total quality management. European Journal of Cardio-Thoracic Surgery 35(5): 751-758, 2009