+ Translate
+ Most Popular
The pigeon tick (Argas reflexus): its biology, ecology, and epidemiological aspects
Prevalence of hemoglobin abnormalities in Kebili (Tunisian South)
Lipogranuloma: a preventable complication of dacryocystorhinostomy
Value of basal plasma cortisol assays in the assessment of pituitary-adrenal insufficiency
Bees from the Belgian Congo. The acraensis group of Anthophora
Placing gingival retraction cord
Total serum IgE, allergy skin testing, and the radioallergosorbent test for the diagnosis of allergy in asthmatic children
Acariens plumicoles Analgesoidea parasites des oiseaux du Maroc
Injuries of terminal phalanges of the fingers in children
Biology of flowering and nectar production in pear (Pyrus communis)
Das Reliktvorkommen der Aspisviper (Vipera aspis L.) im Schwarzwald
Hydrological modelling of drained blanket peatland
Pathologic morphology and clinical significance of the anomalous origin of the left circumflex coronary artery from the right coronary artery. General review and autopsy analysis of 30 cases
Cyto genetic analyses of lymphocyte cultures after exposure to calcium cyclamate
Axelrodia riesei, a new characoid fish from Upper Rio Meta in Colombia With remarks concerning the genus Axelrodia and description of a similar, sympatric, Hyphessobrycon-species
Favorable evolution of a case of tuberculosis of pancreas under antibiotic action
RIFM fragrance ingredient safety assessment, Valencene, CAS Registry Number 4630-07-3
Parenteral microemulsions: an overview
Temperate pasture: management for grazing and conservation
Evaluation of a new coprocessed compound based on lactose and maize starch for tablet formulation
Thermal expansion and cracking of three confined water-saturated igneous rocks to 800C
Revision of the genera of the tribe Stigmoderini (Coleoptera: Buprestidae) a discussion of phylogenetic relationships
Anal tuberculosis. Report of a case
Gastric tuberculosis in the past and present
Adaptive responses of the cardiovascular system to prolonged spaceflight conditions: assessment with Holter monitoring

Cotton QTLdb: a cotton QTL database for QTL analysis, visualization, and comparison between Gossypium hirsutum and G. hirsutum × G. barbadense populations

Cotton QTLdb: a cotton QTL database for QTL analysis, visualization, and comparison between Gossypium hirsutum and G. hirsutum × G. barbadense populations

Molecular Genetics and Genomics: Mgg 290(4): 1615-1625

ISSN/ISBN: 1617-4615

PMID: 25758743

DOI: 10.1007/s00438-015-1021-y

A specialized database currently containing more than 2200 QTL is established, which allows graphic presentation, visualization and submission of QTL. In cotton quantitative trait loci (QTL), studies are focused on intraspecific Gossypium hirsutum and interspecific G. hirsutum × G. barbadense populations. These two populations are commercially important for the textile industry and are evaluated for fiber quality, yield, seed quality, resistance, physiological, and morphological trait QTL. With meta-analysis data based on the vast amount of QTL studies in cotton it will be beneficial to organize the data into a functional database for the cotton community. Here we provide a tool for cotton researchers to visualize previously identified QTL and submit their own QTL to the Cotton QTLdb database. The database provides the user with the option of selecting various QTL trait types from either the G. hirsutum or G. hirsutum × G. barbadense populations. Based on the user's QTL trait selection, graphical representations of chromosomes of the population selected are displayed in publication ready images. The database also provides users with trait information on QTL, LOD scores, and explained phenotypic variances for all QTL selected. The CottonQTLdb database provides cotton geneticist and breeders with statistical data on cotton QTL previously identified and provides a visualization tool to view QTL positions on chromosomes. Currently the database (Release 1) contains 2274 QTLs, and succeeding QTL studies will be updated regularly by the curators and members of the cotton community that contribute their data to keep the database current. The database is accessible from

Please choose payment method:

(PDF emailed within 0-6 h: $19.90)

Accession: 057529380

Download citation: RISBibTeXText

Related references

Analyses chromatographiques des composés phénoliques d'amandes de graines de cotonniers (Gossypium hirsutum L. et G. barbadense L.) - Chromatographic analysis of phenolic compounds in cotton seed kernels (Gossypium hirsutum L. and G. barbadense L.). Coton et Fibres Tropicales (Paris) 45(1): 27-43, 1990

Comparative transcriptome analysis of cotton fiber development of Upland cotton (Gossypium hirsutum) and Chromosome Segment Substitution Lines from G. hirsutum × G. barbadense. Bmc Genomics 18(1): 705, 2017

Transcriptome Analysis Suggests That Chromosome Introgression Fragments from Sea Island Cotton ( Gossypium barbadense ) Increase Fiber Strength in Upland Cotton ( Gossypium hirsutum ). G3 7(10): 3469-3479, 2017

Transcriptomic and biochemical analysis of upland cotton (Gossypium hirsutum) and a chromosome segment substitution line from G. hirsutum × G. barbadense in response to Verticillium dahliae infection. Bmc Plant Biology 19(1): 19, 2019

Comparative study for the relative importance of characters contributing to seed cotton yield in american cotton gossypium hirsutum cultivar mcnair 220 and egyptian cotton gossypium barbadense cultivar giza 75. Journal of Agronomy and Crop Science 156(2): 128-132, 1986

Variations in the characters of upland cotton gossypium hirsutum induced by exotic dna of sea island cotton gossypium barbadense. Acta Genetica Sinica 8(1): 56-62, 1981

Fruiting of upland cotton gossypium hirsutum and pima cotton gossypium barbadense with different planting dates. Agronomy Journal 73(4): 711-715, 1981

Genetic variation of waterlogging tolerance in Pima (Gossypium barbadense) cotton and glanded and glandless Upland cotton (Gossypium hirsutum) under field conditions. Industrial Crops and Products 129: 169-174, 2019

Stability analysis of tetraploid cotton (Gossypium hirsutum L. and Gossypium barbadense L.). Plant Archives 7(2): 733-739, 2007

QTL analysis of cotton fiber quality using multiple Gossypium hirsutum x Gossypium barbadense backcross generations. Crop Science 45(1): 123-140, 2005

Hybridological analysis in interspecific cotton (Gossypium hirsutum L. and Gossypium barbadense L.) hybrids. I. Productivity and its elements. Genetics and Breeding 30(3-4): 49-57, 2000

Hybridological analysis in interspecific cotton (Gossypium hirsutum L. and Gossypium barbadense L.) hybrids. II. Fibre length and lint percentage. Genetics and Breeding 30(3-4): 59-64, 2000

A comparative meta-analysis of QTL between intraspecific Gossypium hirsutum and interspecific G. hirsutum × G. barbadense populations. Molecular Genetics and Genomics: Mgg 290(3): 1003-1025, 2015

Stability analysis of interspecific cotton hybrids (Gossypium hirsutum x G. barbadense). Indian Journal of Agricultural Sciences 78(12): 1058-1062, 2008

Etude d'hybrides F1 issus de croisements interspécifiques entre deux variétés de Gossypium hirsutum et une variété de G. barbadense. Analyse de certains caractères de la fibre - Study of F1 hybrids derived from interspecific crosses between two varieties of Gossypium hirsutum and one variety of Gossypium barbadense. Analysis of some fiber characteristics. Coton et Fibres Tropicales (Paris) 40(4): 169-186, 1985